JFsanchezherrero

Bioinformatician at @HCGB-IGTP, Badalona. External collaborator at @molevol-ub at UniBarcelona. Member of RSGSpain and IRBio.

@molevol-ub @HCGB-IGTPBarcelona

Pinned Repositories

BacterialTyper
Bacterial identification pipeline
Language:Python4 3 140
spaTyper
Computational method for finding spa types.
Language:Python7 3 02
XICRA
Small RNAseq pipeline for paired-end reads
Language:Python7 2 333
BacDup
Bacterial gene duplication analysis pipeline
Language:R1 3 70
catfasta2phyml
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
Language:Perl00
CodeTheFly_UAB
Bioinformatics practical session on how to work in the CodeTheFly project
Language:HTML00
Functional_Genome_Annotation
Scripts and examples employed for the Functional Genome Annotation Workshop (November 2018)
Language:Perl20
GoogleAppsScripts_code
Several examples and information for parsing/tracking emails using Google Apps Scripts
Language:JavaScript10
DOMINO
Development of molecular markers in non-model organisms
Language:Perl4 7 83
Dysdera_silvatica_genome
Dysdera silvatica genome assembly git repository
Language:Perl2 3 00

JFsanchezherrero/Functional_Genome_Annotation
Scripts and examples employed for the Functional Genome Annotation Workshop (November 2018)
Language:Perl20
JFsanchezherrero/BacDup
Bacterial gene duplication analysis pipeline
Language:R1 3 70
JFsanchezherrero/GoogleAppsScripts_code
Several examples and information for parsing/tracking emails using Google Apps Scripts
Language:JavaScript10
JFsanchezherrero/catfasta2phyml
Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file
Language:Perl00
JFsanchezherrero/CodeTheFly_UAB
Bioinformatics practical session on how to work in the CodeTheFly project
Language:HTML00
JFsanchezherrero/docker-domino
Language:Shell00
JFsanchezherrero/Haplomerger2_Multi-threads
Multi thread implementation of Haplomerger2
Language:Perl3 0
JFsanchezherrero/LoteriaNavidad
Language:Python
JFsanchezherrero/mccortex
De novo genome assembly and multisample variant calling
Language:C
JFsanchezherrero/PhiSpy
Modification of Phispy for including in a personal project
Language:Python
JFsanchezherrero/Python_course
Python course for beginners using bioinformatic examples
Language:Jupyter Notebook
JFsanchezherrero/sspace_basic
SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
Language:Perl3 0
JFsanchezherrero/TFM_UOC_AZabala
JFsanchezherrero/Thesis_Template_Latex
Latex template for my thesis dissertation
Language:TeX3 0
JFsanchezherrero/Tutorial_SimpleTeacherAPI