High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute
Badalona, Barcelona, Catalonia, Spain
Pinned Repositories
BacterialTyper
Bacterial identification pipeline
bioconda-recipes
Conda recipes for the bioconda channel.
HCGB.IGTP.DAnalysis
Differential expression/methylation analysis for several platform and techniques
HCGB_python_functions
useful python functions
HCVgenotool
Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
islandpath
IslandPath standalone software
pyan
pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which functions are called and how often; there are various tools that will generate a call graph in that way, usually using debugger or profiling trace hooks - for example: https://pycallgraph.readthedocs.org/ This code was originally written by Edmund Horner, and then modified by Juha Jeronen. See README for the original blog posts and links to their repositories.
RNA_seq_pipe
spaTyper
Computational method for finding spa types.
XICRA
Small RNAseq pipeline for paired-end reads
High Content Genomics & Bioinformatics - Germans Trias i Pujol Research Institute's Repositories
HCGB-IGTP/spaTyper
Computational method for finding spa types.
HCGB-IGTP/XICRA
Small RNAseq pipeline for paired-end reads
HCGB-IGTP/BacterialTyper
Bacterial identification pipeline
HCGB-IGTP/HCVgenotool
Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
HCGB-IGTP/islandpath
IslandPath standalone software
HCGB-IGTP/pyan
pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which functions are called and how often; there are various tools that will generate a call graph in that way, usually using debugger or profiling trace hooks - for example: https://pycallgraph.readthedocs.org/ This code was originally written by Edmund Horner, and then modified by Juha Jeronen. See README for the original blog posts and links to their repositories.
HCGB-IGTP/RNA_seq_pipe
HCGB-IGTP/bioconda-recipes
Conda recipes for the bioconda channel.
HCGB-IGTP/HCGB.IGTP.DAnalysis
Differential expression/methylation analysis for several platform and techniques
HCGB-IGTP/HCGB_python_functions
useful python functions
HCGB-IGTP/wanderer_v2
HCGB-IGTP/XICRA.stats
R package for descriptive statistics of XICRA output results