HCGB-IGTP/XICRA

Issues

• test_subset.sh - miRNA analysis - urllib.error.HTTPError: HTTP Error 404: Not Found

  #48 opened 8 months ago by kubu4
  0

• NO samples were retrieved

  #42 opened 2 years ago by vetmohit89
  8

• installer.sh error: multiqc 1.19 requires jinja2>=3.0.0, but you have jinja2 2.11.3

  #47 opened 8 months ago by kubu4
  5

• How to perform differential expression

  #41 opened 9 months ago by Ben7124
  1

• Missing import XICRA.modules.database in modules/tRNA.py

  #37 opened 9 months ago by cplessis
  5

• Compatibility with sRNAbench

  #43 opened 10 months ago by jonahcullen
  1

• log of commands

  #44 opened 10 months ago by EmeTexe
  9

• TypeError: can only concatenate str (not "tuple") to str

  #46 opened 10 months ago by Cesnl
  3

• Duplicates from miraligner

  #45 opened 2 years ago by jonahcullen
  2

• module 'HCGB' has no attribute 'functions'

  #5 opened 2 years ago by ANDdna1991
  17

• No such file or directory when doing miRNA analysis

  #40 opened 2 years ago by Ben7124
  2

• ResolvePackageNotFound

  #33 opened 2 years ago by dmi229
  2

• miRNA module error

  #21 opened 2 years ago by Ben7124
  4

• How to install it properly

  #36 opened 2 years ago by Ben7124
  8

• miRNA module not finding joined reads

  #39 opened 2 years ago by jonahcullen
  2

• Biotype and featureCounts argument

  #38 opened 2 years ago by jonahcullen
  2

• ResolvePackageNotFound

  #30 opened 2 years ago by Chenglin20170390
  1

• miRNA analysis crashed

  #6 opened 2 years ago by blaizereal
  4

• Miraligner not working

  #35 opened 2 years ago by Ben7124
  0

• ModuleNotFoundError: No module named 'build.lib'

  #29 opened 3 years ago by ErickMUO
  2

• miRNA functionality with elevated number of samples

  #23 opened 3 years ago by JFsanchezherrero
  1

• miRNA exlude samples

  #24 opened 3 years ago by JFsanchezherrero
  0

• Annotation file error when running biotype

  #20 opened 3 years ago by Ben7124
  2

• Base quality filtering

  #16 opened 3 years ago by Ben7124
  4

• Check multiple software options to include in piRNA module

  #15 opened 3 years ago by JFsanchezherrero
  1

• MINTmap not found

  #13 opened 3 years ago by Ben7124
  3

• XICRA join Error no samples were retrieved

  #14 opened 3 years ago by Ben7124
  2

• Check mulitple software options for tRNA module

  #11 opened 3 years ago by JFsanchezherrero
  2

• Fix setup.py

  #4 opened 3 years ago by JFsanchezherrero
  1

• understanding the miRNA output

  #10 opened 3 years ago by mars188
  9

• pipeline doesn't run properly on my data

  #7 opened 3 years ago by mars188
  7

• Add help trimm adapters

  #8 opened 3 years ago by JFsanchezherrero
  0

• Missing software in conda bioconda

  #3 opened 4 years ago by JFsanchezherrero
  5