Pinned Repositories
EquCab3Nice
Some scripts to pull the canonical FASTA file from NCBI and make it nice
IndexForTheFuture
Make nice and generate EC3 indices.
LocusPocus
Genetic coordinates so simple, it feels like MAGIC!
Minus80
Freeze and integrate biological datasets.
MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
RNAMapping
SLOPIdog
unicorn
wags
jonahcullen's Repositories
jonahcullen/wags
jonahcullen/unicorn
jonahcullen/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
jonahcullen/SLOPIdog
jonahcullen/IndexForTheFuture
Make nice and generate EC3 indices.
jonahcullen/AIMEE
jonahcullen/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
jonahcullen/caper
Cromwell/WDL wrapper for Python
jonahcullen/DemoWAGS
jonahcullen/EGGLImputationPipeline
jonahcullen/fastp
An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)
jonahcullen/GLBIO-2021
jonahcullen/gridss
GRIDSS: the Genomic Rearrangement IDentification Software Suite
jonahcullen/gtex-pipeline
GTEx & TOPMed data production and analysis pipelines
jonahcullen/HorseStuff
jonahcullen/Immune_receptor_NETWORK-GENERATION
Generating a data framework for B-cell and T-cell receptor sequencing data using network analysis from which biological information may be derived
jonahcullen/imnet
imNet: a Sequence Network Construction Toolkit
jonahcullen/instructor-training
Instructor Training
jonahcullen/lncRNA_time_course
This repository was created to assist with the reproducibility of all of the analyses presented in the published lncRNA time course manuscript.
jonahcullen/miREC
An error correction tool for miRNA reads at single-base resolution
jonahcullen/MuscleFatTissueNetwork
Muscle Fat Tissue Network Comparison
jonahcullen/NEAT
jonahcullen/planets
jonahcullen/PLASTER
Nextflow pipeline for long amplicon typing of PacBio SMRT sequencing data
jonahcullen/prost
Prost!, a tool for miRNA annotation and next generation smallRNA sequencing experiment analysis
jonahcullen/rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
jonahcullen/slurm
Cookiecutter for snakemake slurm profile
jonahcullen/warp
WDL Analysis Research Pipelines
jonahcullen/Wrappar
Pipeline for the processing and analysis of antigen receptor repertoires
jonahcullen/zhooshularity
more magic!