JFsanchezherrero
Bioinformatician at @HCGB-IGTP, Badalona. External collaborator at @molevol-ub at UniBarcelona. Member of RSGSpain and IRBio.
@molevol-ub @HCGB-IGTPBarcelona
JFsanchezherrero's Stars
BigDataBiology/argNorm
ARG normalization by mapping to the ARO ontology.
HCGB-IGTP/XICRA
Small RNAseq pipeline for paired-end reads
datawithdanny/sql-masterclass
sib-swiss/training-collection
Collection of bioinformatics training materials
staphopia/staphopia-sccmec
Archived - please see updated sccmec tool at link below
FlorianThibord/OptimiR
miRSeq data alignment workflow - integrates genetic information to assess the impact of variants on miRNA expression
gamcil/clinker
Gene cluster comparison figure generator
HCGB-IGTP/HCVgenotool
Genotyping tool to assess HCV genetic diversity (genotype and subtype) from NGS data.
HCGB-IGTP/islandpath
IslandPath standalone software
HCGB-IGTP/pyan
pyan is a Python module that performs static analysis of Python code to determine a call dependency graph between functions and methods. This is different from running the code and seeing which functions are called and how often; there are various tools that will generate a call graph in that way, usually using debugger or profiling trace hooks - for example: https://pycallgraph.readthedocs.org/ This code was originally written by Edmund Horner, and then modified by Juha Jeronen. See README for the original blog posts and links to their repositories.
HCGB-IGTP/spaTyper
Computational method for finding spa types.
TJU-CMC-Org/MINTmap
This is the code repository, to download MINTmap for basic usage please visit our website at
Erfaniaa/text-to-commit-history
Write a large text on your GitHub profile, with your commits history (contribution graph).
ngs-fzb/MTBseq_source
MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.
miRTop/mirtop
command lines tool to annotate miRNAs with a standard mirna/isomir naming
molevol-ub/Dysdera_silvatica_genome
Dysdera silvatica genome assembly git repository
laramaktub/docker-domino
molevol-ub/DOMINO
Development of molecular markers in non-model organisms
nsoranzo/sspace_basic
SSPACE Basic, SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension
broadinstitute/pilon
Pilon is an automated genome assembly improvement and variant detection tool
genomehubs/ags-2017-workshop
Arthropod Genomics Symposium 2017 workshop scripts
mourisl/Rascaf
Scaffolding with RNA-seq read alignment
brguez/MEIBA
Mobile Element Insertion Breakpoint Analyzer (MEIBA)
rrwick/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily