wanyuac
Bioinformatician working on antimicrobial resistance and molecular epidemiology
University of LiverpoolLiverpool, England
Pinned Repositories
APDtools
Scripts for measurement and analysis of allelic physical distances in bacterial genomes (previously repository name: physDist)
Assembly_toolkit
Scripts for de novo genome assembly
BINF_toolkit
Handy scripts for routine bioinformatic analysis
cgSNPs
Acquisition and processing core-genome SNPs
geneDetector
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
GeneMates
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
handyR
Handy functions for daily R programming
NITREc
Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
readSimulator
Simulating paired-end short sequencing reads from circular and linear genomes
Taxonomy_toolkit
Scripts facilitating taxonomical analysis
wanyuac's Repositories
wanyuac/GeneMates
An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences
wanyuac/BINF_toolkit
Handy scripts for routine bioinformatic analysis
wanyuac/readSimulator
Simulating paired-end short sequencing reads from circular and linear genomes
wanyuac/handyR
Handy functions for daily R programming
wanyuac/cgSNPs
Acquisition and processing core-genome SNPs
wanyuac/geneDetector
A tool for conducting a gene screen on assemblies, producing an SRST2-like output.
wanyuac/APDtools
Scripts for measurement and analysis of allelic physical distances in bacterial genomes (previously repository name: physDist)
wanyuac/NITREc
Chromosomal mutations associated with nitrofurantoin resistance in Escherichia coli
wanyuac/PAMmaker
Pipelines creating allelic presence-absence matrices from SRST2 and ARIBA results
wanyuac/rasti
Recursive assembly-based search for target nucleotides
wanyuac/SRST2_toolkit
Supplementary tools for SRST2 and later series
wanyuac/Assembly_toolkit
Scripts for de novo genome assembly
wanyuac/Taxonomy_toolkit
Scripts facilitating taxonomical analysis
wanyuac/all2vcf
Toolkit to convert the output of common variant calling programs to VCF
wanyuac/alleleClusterLocator
Locating co-localised alleles in contigs, extracting embedding genomic regions and clustering these sequences.
wanyuac/ARIBA_toolkit
Scripts for ARIBA-based gene detection
wanyuac/Bandage
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
wanyuac/EnterobaseAssemblyDownloader
Python script for downloading assemblies from enterobase
wanyuac/hugo-book
Hugo documentation theme as simple as plain book
wanyuac/Mainroad
Responsive, simple, clean and content-focused Hugo theme based on the MH Magazine lite WordPress theme
wanyuac/Pipeline
Bioinformatics pipelines
wanyuac/Small_Basic
Small Basic programs
wanyuac/SPAdes-Contig-Graph
a tool for creating a FASTG contig graph from a SPAdes assembly
wanyuac/wanyuac.github.io
Automatic redirection to the blog