MarWoes/wg-blimp

Issues

• Error in rule gemBS

  #26 opened 2 months ago by deb0612
  3

• Error in rule prep_gemBS_files:

  #25 opened a year ago by lexie-lee
  1

• How to find tool default parameters

  #24 opened 2 years ago
  0

• SA Builder Error running the example

  #23 opened 2 years ago
  1

• Environment installation broken.

  #21 opened 3 years ago by JakeLehle
  2

• Support for different species

  #5 opened 4 years ago by lardenoije
  12

• Issue with bwameth.py errno 32

  #17 opened 3 years ago by JakeLehle
  8

• Pipeline fails due to Picard installation

  #18 opened 3 years ago by MarWoes
  8

• How to provide --latency-wait flag? Is this the problem?

  #16 opened 3 years ago by ebprideaux
  1

• Running wg-blimp in one control and one experiment data, without replication.

  #14 opened 3 years ago by ntinamu001
  3

• run pipeline for one sample

  #13 opened 3 years ago by icanwinwyz
  2

• Running wg-blimp in cluster environments

  #11 opened 3 years ago by emattei
  4

• Are there pipeline options for single-ended reads?

  #15 opened 3 years ago by ntinamu001
  1

• Qualimap report inconsistent to mosdepth

  #1 opened 5 years ago by MarWoes
  0

• Make create-config fastq selection less ambigous

  #9 opened 4 years ago by MarWoes
  0

• Add error message when sample .csv contains no (or wrong) column names

  #10 opened 4 years ago by MarWoes
  0

• Switch to snakemake environments

  #12 opened 4 years ago by MarWoes
  1

• Picard running out of disk space

  #8 opened 4 years ago by MarWoes
  4

• IGV BAM file links not working in Shiny interface

  #2 opened 4 years ago by MarWoes
  2

• FASTQ name conflict for sample names that are a substring of other sample names

  #3 opened 4 years ago by MarWoes
  2

• Reference genome

  #4 opened 4 years ago by freedomq8
  2

• Broken Snakefile (invalid name for input, output, ...): insert is reserved for internal use

  #6 opened 4 years ago by MarWoes
  2

• Faulty hg19 gene location annotations

  #7 opened 4 years ago by MarWoes
  1