oschwengers/referenceseeker

Database update

MostafaYA opened this issue · 3 comments

Hi,

The pre-built referenceseeker databases have not been updated since a while, causing some new species not to be detected. Would you please consider an update? I assume one can do this with the referenceseeker_db init but if you detail this in the README for the RefSeq Bacteria for example, that would be great

Thank you!

Hi @MostafaYA,
thanks for reaching out. Indeed, they've become quite old. I'll put an update on my ToDo and try to address this ASAP.

@MostafaYA I just finished and published a new version of the RS database: https://doi.org/10.5281/zenodo.10488564

Due to the Zenodo standard storage quota, I couldn't upload the GTDB bacteria part, if this is of interest, I'll figure out how to provide it, as well.

Thanks !!