metagenomic-classification
There are 18 repositories under metagenomic-classification topic.
FOI-Bioinformatics/flextaxd
FlexTaxD (Flexible Taxonomy Databases) - Create, add, merge different taxonomy sources (QIIME, GTDB, NCBI and more) and create metagenomic databases (kraken2, ganon and more )
muellan/metacache
memory efficient, fast & precise taxnomomic classification system for metagenomic read mapping
taxprofiler/taxpasta
TAXnomic Profile Aggregation and STAndardisation
prophyle/prophyle
Accurate, resource-frugal and deterministic DNA sequence classifier.
EBI-Metagenomics/pipeline-v5
This repository contains all CWL descriptions of the MGnify pipeline version 5.0.
treangenlab/lemur
Lemur is a tool for rapid and accurate taxonomic profiling on long-read metagenomic datasets
rcs333/CLOMP
:horse: CLinically Okay Metagenomic Pipeline :horse:
pfeiferd/genestrip
Genestrip - Efficient read classification, filtering and k-mer counting for selected groups of species
bo1929/CONSULT-II
Accurate taxonomic classification and abundance profiling using locality-sensitive hashing.
dubssieg/wisp
XGBoost implementation for bacteria family identification
hivlab/discover-virome
discover-virome: identify and quantify viruses from metagenomic assemblies
laurentnoe/iedera
subset and spaced seed design tool
zoey-rw/metagenomes_NEON
Code associated with Werbin et al. 2022, F1000 Research
exabiome/gtnet
The Genome Taxonomy Network for assigning microbial taxonomy to DNA sequences
pfeiferd/genestrip-db
A selection of databases for Genestrip
bersilin-robert1609/CS6024-AACB-Metagenomic-Analysis
Contains all the code and data related to the CS6024 - Algorithmic Approaches to Computational Biology in the topic: Disease detection using metagenomic dataset
hsmurali/Transitive_Annotation
The impact of transitive annotation on the training of taxonomic classifiers