inab/trimal

Issues

• Unable to install new version

  #103 opened 5 months ago by webguoi
  0

• Issue with trimAl on Windows:

  #101 opened 6 months ago by NoorulemanAbid
  6

• 'compareset' error when using trimAL 1.2 on Windows

  #54 opened 7 months ago by dongzhang0725
  5

• Tag a new release?

  #43 opened 7 months ago by tseemann
  3

• How to only trim terminal of the alignment with a threshold value of gap

  #98 opened 10 months ago by permia
  1

• trimal.exe has stopped working message

  #26 opened a year ago by kuhaudos
  1

• Error: the symbol '*' is incorrect

  #70 opened a year ago by Wuhl00
  4

• WARNING 010

  #76 opened a year ago by WRran-Hydrogen
  4

• Error: the symbol 'Z' accesing the matrix is not defined in this object

  #83 opened a year ago by Dylan-Padilla
  2

• Throw error when only input output are given

  #40 opened a year ago by rLannes
  1

• trimal -selectcols doesn't work

  #56 opened a year ago by darap888
  6

• remove columns with gaps in first line?

  #61 opened a year ago by dstern
  1

• "Permission denied" when installing (MacOS M1 chip)

  #62 opened a year ago by HeidiOttesen
  1

• WARNING: Removing column '743' composed only by gaps

  #71 opened a year ago by MaxBai0123
  1

• Error message on alignment when using TrimAl

  #74 opened a year ago by sakuragi0109
  1

• errors of "Segmentation fault (core dumped)"

  #93 opened a year ago by zhengyanstu
  2

• Cutting header name to 10 letters/symbols

  #82 opened a year ago by samandmac
  2

• Removing short sequences

  #81 opened 2 years ago by theo-allnutt-bioinformatics
  2

• [Question] Is Linux/Mac ARM64 officially supported ?

  #67 opened 2 years ago by markjens
  1

• Specifying an alternative similarity matrix

  #77 opened 2 years ago by JonathonMifsud
  2

• Redundant asignation on Sequences Matrix = operator

  #46 opened 6 years ago by Vicfero
  1

• trimAl doesn't recognise alignment

  #53 opened 5 years ago by honeyella
  5

• Better understand corner case for gappyout

  #65 opened 3 years ago by scapella
  0

• managing/ignoring warnings

  #64 opened 3 years ago by scapella
  0

• Between '-backtrans' and '-nogaps' parameter, Which one to use first?

  #63 opened 3 years ago by kishor2019
  0

• trimal: command not found

  #60 opened 4 years ago by MohammadJamilShuvo
  0

• Removing gappy sequences

  #58 opened 4 years ago by BenKuhnhaeuser
  1

• Option to remove all ambiguous columns

  #57 opened 5 years ago by vatanparast
  0

• Does trimal have a codon alignment option ?

  #55 opened 5 years ago by BenjaminGuinet
  0

• removing alignment length to taxon name?

  #41 opened 7 years ago
  1

• Complementary functionality doesn't work as expected when using consistency-based methods

  #48 opened 6 years ago by scapella
  0

• Removing sequences with manual overlap

  #47 opened 6 years ago by bruceamurphy
  3

• Should gaps be included in the conservation score computation?

  #37 opened 7 years ago by thkuo
  2

• TrimAl compareset error

  #45 opened 7 years ago by emaldo
  1

• Compareset may crash when more alignments than sequences on the alignments are provided

  #44 opened 7 years ago by Vicfero
  1

• Compareset ends without reporting when one alignment couldn't be loaded

  #42 opened 7 years ago by Vicfero
  0

• Accept stdin as input

  #24 opened 9 years ago by alephreish
  5

• Compilation problem (mac os 10.13, Kernel Version: Darwin 17.0.0)

  #38 opened 7 years ago by dinhe878
  6

• Can't install trimal on Mac

  #27 opened 7 years ago by kuhaudos
  3

• ERROR: Alignment not loaded:

  #36 opened 7 years ago by xiaoaozqd
  1

• Improve columns mapping

  #35 opened 7 years ago by scapella
  0

• readAl / trimAl creates an empty file when trying to output a non-aligned format/alignment to an aligned-format.

  #34 opened 7 years ago by Vicfero
  1

• readAl/trimAl fails to output to nexus, mega and nbrf if sequences are classified 'Deg'

  #33 opened 7 years ago by Vicfero
  1

• BLOSUM45 error

  #31 opened 8 years ago by DEsalasL
  0

• duplicate sequence IDs

  #30 opened 8 years ago by hildebra
  0

• Add an option for avoiding dumping any output alignment

  #29 opened 8 years ago by scapella
  0

• Problem with "n"

  #28 opened 8 years ago by ijulca
  0

• Error message on some alignments

  #25 opened 9 years ago by m-angelov
  2

• Problem using -compareset, -ct, -gt together.

  #23 opened 9 years ago by tomfy
  2

• degenerete codes in alignments

  #22 opened 10 years ago by ijulca
  0