Spanish National Bioinformatics Institute

Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO

Spain

Pinned Repositories

appris
APPRIS - A system for annotating alternative splice isoforms
Language:Perl3 2 00
BIOLITMAP
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
Language:Python20 7 13
etox
Official development repository for LimTox
Language:HTML5 20 12
fega-mm
Language:HTML3 7 493
openVRE
Open Virtual Research Environment
Language:JavaScript6 10 02
rd-connect-cas-overlay
RD-Connect CAS overlay
Language:Shell6 18 152
SmartRNASeqCaller
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
Language:Python7 6 113
TCGA_benchmarking_workflow
Language:HTML3 9 14
trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Language:C++161 12 6940
WfExS-backend
Workflow Execution Service Backend
Language:Python16 8 396

Spanish National Bioinformatics Institute's Repositories

inab/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
Language:C++161 12 6940
inab/WfExS-backend
Workflow Execution Service Backend
Language:Python16 8 396
inab/benchmarking-data-model
OpenEBench Benchmarking Data Model repository
Language:HTML2 17 1287
inab/bench_event_api
bench_event_api
Language:Python1 4 33
inab/bench_event_table
Language:JavaScript1 7 21
inab/openEBench-nuxt
Vue Client for the OpenEBench Micro Frontends
Language:JavaScript1 7 201
inab/python-extended-json-schema-validator
Language:Python1 5 2
inab/beacon-TRE
Reference Implementation Beacon that works with RabbitMQ for Trusted Research Environments (TREs).
Language:Python
inab/crypt4ghfs
A fuse layer showing Crypt4GH encrypted files as if they were decrypted
Language:Python
inab/dockerized_vre
Language:JavaScript2 0
inab/FAIRsoft_indicators
Specification of FAIRsoft indicators, by OpenEBench.
Language:HTML7 0
inab/hello-workflows
Repository to store toy "hello world"-like sample workflows for different workflow engines. Mainly to be consumed by WfExS tests
Language:Common Workflow Language8 0
inab/InSoLiTo
Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking
Language:Python1 01
inab/licenses-mapping
A tool to map strings to SPDX licenses names or IDs.
Language:Python8 4
inab/lrgasp-challenge-3_benchmarking_docker
Language:Python1 0
inab/oeb-docker-compose
Docker Compose Files for the OpenEBench Landscape
inab/oeb-project-markdown-editor
OpenEBench Scientific summary markdown editor for projects
Language:JavaScript8 0
inab/oeb-visualizations
Library of data visualizations for OpenEBench
Language:HTML3 3
inab/oeb-visualizations-demo
Web showing examples of components in OEB Visualizations library
Language:JavaScript2 0
inab/oeb-widgets-v2
Language:Vue1
inab/oeb-widgets-v3
Demonstration of chart widgets before integration into OpenEBench. With Plotly.
Language:Vue
inab/OEB_level2_data_migration
Language:Python9 62
inab/opeb-enrichers
OpenEBench metadata enrichers (citations, GitHub, etc.)
Language:Python14 41
inab/openEBench-nuxt-v3
OpenEBench Micro Frontends. Nuxt 3 version
Language:Vue
inab/OpenEBench_scientific_visualizer
Language:JavaScript9 02
inab/qfo2020-benchmark-webservice
Language:Python
inab/ro-terms-wfexs
Repository for creating new terms for Research Objects
Language:Python0 0
inab/uptime-chart-OEB
Standalone widget to display the uptime of a tool at OpenEBench.
Language:JavaScript7 01
inab/vre-process_nextflow-executor
Nexflow workflow job executor (for OpenEBench VRE installation)
Language:Python9 91
inab/workflow-run-crate
Workflow Run RO-Crate profile
Language:Shell1 0