Spanish National Bioinformatics Institute
Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO
Spain
Pinned Repositories
appris
APPRIS - A system for annotating alternative splice isoforms
BIOLITMAP
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
disease_perception
Personalized Comorbidity Profile Generation
etox
Official development repository for LimTox
openVRE
Open Virtual Research Environment
rd-connect-cas-overlay
RD-Connect CAS overlay
SmartRNASeqCaller
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
TCGA_benchmarking_workflow
trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
WfExS-backend
Workflow Execution Service Backend
Spanish National Bioinformatics Institute's Repositories
inab/trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
inab/WfExS-backend
Workflow Execution Service Backend
inab/openVRE
Open Virtual Research Environment
inab/benchmarking-data-model
OpenEBench Benchmarking Data Model repository
inab/InSoLiTo
Inferring Social Life of Tools (InSoLiTo) is an OpenEBench project that provide guidance on scientific tools worth benchmarking
inab/openEBench-nuxt
Vue Client for the OpenEBench Micro Frontends
inab/bench_event_api
bench_event_api
inab/bench_event_table
inab/github-metadata-api
API to extract metadata from a GitHub repository and update files.
inab/observatory-api
Software Observatory API
inab/oeb-docker-compose
Docker Compose Files for the OpenEBench Landscape
inab/oeb-visualizations
Library of data visualizations for OpenEBench
inab/python-groovy-parser
Repo with a proof of concept of Groovy parser
inab/vre-process_nextflow-executor
Nexflow workflow job executor (for OpenEBench VRE installation)
inab/benchmarking_workflows_results_visualizer
inab/BioHackEU24_project_25_preprint
BioHackathon Europe 2024 Project 25 preprint
inab/demo_oeb-widgets-graphs
Demo in Javascript, React and PHP
inab/dockerized_vre
inab/execution-process-metrics-collector
A python script and a set of bash scripts to monitor, collect, and visualize metrics of a given Linux process or a give command line
inab/hello-workflows
Repository to store toy "hello world"-like sample workflows for different workflow engines. Mainly to be consumed by WfExS tests
inab/inab-login
Login button for inab components
inab/inab-media-library
A dedicated repository for hosting and managing multimedia content (videos, images, and graphics), serving as a centralized library for visual resources to support presentations and outreach efforts.
inab/InSoLiToAPI
API of InSoLiTo where you can query a tool via API GET and it displays it in the webpage
inab/licenses-mapping
A tool to map strings to SPDX licenses names or IDs.
inab/oeb-messages
OEB messages component
inab/oeb-widgets-graphs
Graph widgets for OEB applications
inab/openEBench-nuxt-v3
OpenEBench Micro Frontends. Nuxt 3 version
inab/ro-terms-wfexs
Repository for creating new terms for Research Objects
inab/RWFileLock
Readers / writers file lock python helper class
inab/w3id.org
Website source code for w3id.org