Spanish National Bioinformatics Institute
Alfonso Valencia | BSC, ICREA, INB Director - Salvador Capella-Gutierrez | BSC, INB CTO
Spain
Pinned Repositories
appris
APPRIS - A system for annotating alternative splice isoforms
BIOLITMAP
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
etox
Official development repository for LimTox
fega-mm
openVRE
Open Virtual Research Environment
rd-connect-cas-overlay
RD-Connect CAS overlay
SmartRNASeqCaller
SmartRNASeqCaller is a post-processing pipeline to improve germline variant calling from RNA-Seq data
TCGA_benchmarking_workflow
trimal
A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0
WfExS-backend
Workflow Execution Service Backend
Spanish National Bioinformatics Institute's Repositories
inab/iPC-Portal
A WP theme for the iPC data portal
inab/EPICO-FAIRTracks-backend
EPICO REST API FAIRTracks backend
inab/EPICO-ES-backend
EPICO REST API ElasticSearch backend , splitted from EPICO-REST-API repo
inab/BP-Schema-tools
Bioinformatic Pantry Schema tools
inab/EPICO-abstract-backend
EPICO abstract backend, extracted from EPICO-REST-API
inab/EPICO-project-template
A project template showing how to use EPICO
inab/EPICO-data-loading-scripts
EPICO + BLUEPRINT DCC database loading scripts
inab/EPICO-data-model
The EPICO data model, designed using BP-Schema-tools
inab/BP-Model
Bioinformatic Pantry data Model
inab/TabParser
Very small Perl library which helps parsing tabular files
inab/pubmed_retrieval
inab/fairtracks_standard
FAIRification of Genomics Data Tracks standards
inab/FAIRsoft_tfm
A reference repository for the metrics associated to the FAIR for software principles
inab/beacon-network
inab/OpEB-VRE
inab/mg-process_TCGA_CD
TCGA Cancer Detection (for MuG/VRE OpenEBench installation)
inab/rpm-tomcat
An RPM spec file to install Tomcat (currently 7.0.x and 8.5.x)
inab/FAIRPlus-OLS-docker
inab/rd-connect-user-management
RD-Connect scripts to batch create users from a tabular file with e-mail, name, and possibly preferred username
inab/BIOLITMAP
Code for the paper "BIOLITMAP: a web-based geolocated and temporal visualization of the evolution of bioinformatics publications" in Oxford Bioinformatics.
inab/rd-connect-user-management-interface
Code implementing the UI to manage users of RD-Connect Project
inab/rd-connect-requests-interface
RD-Connect requests web user interface, to be paired with rd-connect-user-management and rd-connect-user-management-interface
inab/rd-connect_cas-dockerfiles
RD-Connect CAS / LDAP / UMI Dockerfiles
inab/rd-connect-cas-management-overlay
CAS Management overlay for RD-Connect
inab/rd-connect-cas-overlay
RD-Connect CAS overlay
inab/RDConnect_RNASeq
RDConnect RNASeq
inab/elixirmap
Graphical representation of ELIXIR bibliography and related institutions
inab/bibmap
inab/spanish_foundations
inab/jbi2018