permia

Pinned Repositories

• LucaProt

  LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.

  Language:Python17331429

• diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1.1k37725180

• learnMSA

  Learning and Aligning Large Protein Families with support of protein language models.

  Language:Jupyter Notebook213164

• VirBot

  VirBot: a protein-based RNA virus detector for metagenomic data

  Language:Python302126

• trimal

  A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0

  Language:C++199127245

• Dense-Homolog-Retrieval

  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval

  Language:Python1014276

• centrifuger

  Classifier for metagenomic sequences using FM-index with run-block compressed BWT.

  Language:C++574167

• seqkit

  A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

  Language:Go1.4k26456162

• trinityrnaseq

  Trinity RNA-Seq de novo transcriptome assembly

  Language:Perl852561.4k320

• CCMetagen

  Microbiome classification pipeline

  Language:Python6646020

permia's Repositories