bbuchfink/diamond

Issues

• `view qseq` uses letters `ARND` instead of `ACTG`

  #798 opened 2 months ago by imLew
  8

• Clarification on Memory Optimization with -b and -c Parameters

  #853 opened 2 months ago by SaimMomin12
  0

• Performance regression - tantan query masking on Mac

  #838 opened 2 months ago by HillJamie
  2

• Linking CXX executable diamond fails during make

  #808 opened 2 months ago by Monkjj
  2

• When running diamond blastp in multiprocessing mode, some processes hang or segfault non deterministically.

  #801 opened 2 months ago by beazerj
  3

• "Error: Array size overflow" when using Diamond on large custom database

  #823 opened 2 months ago by CaroleBelliardo
  3

• Diamond Clustering - Failed to allocate sufficient memory. Please refer to the manual for instructions on memory usage.

  #842 opened 4 months ago by nhngoc02
  3

• diamond blastp is producing non-deterministic alignment output

  #844 opened 2 months ago by etvedte
  2

• segmentation fault

  #815 opened 3 months ago by juliayork
  10

• Using --include-lineage seems to use 4x more RAM than without -- is that normal?

  #851 opened 2 months ago by erikrikarddaniel
  3

• Error detecting database when running from bash script

  #850 opened 2 months ago by Lamdolf
  6

• diamond hangs at Deallocating buffers...

  #849 opened 3 months ago by sherlyn99
  4

• Estimating processing time for large-scale protein similarity filtering using DIAMOND

  #848 opened 3 months ago by ZeaMays14142
  1

• How to compile with CUDA support?

  #847 opened 3 months ago by ZeaMays14142
  0

• How to compile with CUDA support?

  #846 opened 3 months ago by ZeaMays14142
  0

• How does --iterate work with --max-target-seqs 1 ?

  #845 opened 3 months ago by Abieskawa
  1

• "Tabulator character in sequence title" warning

  #821 opened 9 months ago by Somebodyatthdoor
  1

• Documentation for realign is not updated

  #822 opened 9 months ago by dvillarreal4868
  1

• singular version of staxids command?

  #807 opened a year ago by ewaltari
  1

• Unrecognized sequence character in BLAST database

  #826 opened 8 months ago by anearman
  1

• Blast database formatted with prepdb does not support taxonomic information

  #805 opened a year ago by cedricblais
  4

• Error: Error opening temporary file 24/diamond-tmp-YA0Xiz

  #809 opened 3 months ago by JipengLuo
  1

• output parameter prevents diamond realign workflow

  #820 opened 3 months ago by tag92-CornellUniv
  1

• some regions of some sequences were converted to Xs after exporting unaligned queries with --un in diamond blastp

  #843 opened 3 months ago by permia
  2

• Diamond with database of small kmers

  #811 opened 10 months ago by raeshrode
  1

• BLAST NR Support Self-compiled libraries and BLAST version 2.16

  #836 opened 6 months ago by mweberr
  3

• Diamond blastp two sequences with themselves, there is 0 pairwise alignments reported

  #840 opened 5 months ago by Prangejet
  1

• Error: "Searching alignments... No such file or directory"

  #841 opened 4 months ago by mirandaccarter
  3

• Using MAGs as input

  #824 opened 4 months ago by Christaline-George
  1

• --global-ranking, impact and when to set lower?

  #814 opened 10 months ago by fpusan
  1

• Error running tutorial : "Computing alignments... Illegal instruction: 4" (MACOS)

  #806 opened a year ago by rberlemont
  1

• Using blast can find results, but diamond has no results

  #839 opened 5 months ago by ggra-billionare
  2

• Optimising the speed of DIAMOND based on the size of input queries (and other)

  #829 opened 7 months ago by charlesfoster
  1

• 希望支持对非生物数据的支持

  #830 opened 5 months ago by DengYongjiuDengYongjiu
  1

• Minimum query length in diamond blastp

  #832 opened 5 months ago by bucongfan
  3

• Testsuite crashes with "Bus error" on sparc64 due to bad alignment

  #835 opened 6 months ago by glaubitz
  8

• ERROR [diamond_search()]

  #827 opened 5 months ago by hysong0921
  1

• paired-end diamond with local database

  #816 opened 5 months ago by 2061574124
  1

• tmpdir issue

  #817 opened 5 months ago by mintonrl
  1

• Request: pre-built databases for download

  #810 opened 10 months ago by bheimbu
  0

• Cannot include both --query_cover and --subject_cover in my search.

  #812 opened 5 months ago by KPapac
  1

• Conda/bioconda install - packages not found error

  #813 opened 5 months ago by ryan-boobybiome
  3

• trying to use diamon on macos

  #799 opened 5 months ago by keecarter
  2

• Is there an option like blastp to set word size for short sequences?

  #802 opened 5 months ago by ZhangBioLab
  2

• Error: Invalid parameter count for option '--tmpdir'

  #803 opened 5 months ago by lhxaurora
  3

• Hit not found for certain queries with custom 1/-1 matrix

  #819 opened 9 months ago by tanhevg
  2

• option --memory-limit raises error

  #825 opened 5 months ago by h836472
  1

• DIAMOND index is refusing to build; error: Writing sequences... /cm/local/apps/slurm/var/spool/job16162007/slurm_script: line 16: 3788602 Killed ./diamond makedb --in nr.gz -d nr slurmstepd: error: Detected 1 oom_kill event in StepId=16162007.batch. Some of the step tasks have been OOM Killed.

  #833 opened 6 months ago by lyisrae1
  0

• Use custom score matrix error？

  #804 opened a year ago by liufuyan2016
  1

• Could not find diamond in dependencies/ folder.

  #800 opened a year ago by karthickbrlab
  0