hildebra
I'm a Bioinformatican specialized in metagenomics.
Quadram Institute/ Earlham InstituteNorwich, UK
Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
brainMicrobiomeRscripts
Scripts for brain microbiome analysis
canopy2
canopy clustering of gene catalogues
clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
MATAFILER
Metagenomic assembly, genome reconstruction and functional as well as taxonomic profiling
mg-tk
metagenomic toolkit - end-to-end solution for analysing metagenomes
Rarefaction
Rarefaction scripts
rdCover
calculates rd coverage; used for MATAFILER
sdm
Fast tool for sequence related tasks
hildebra's Repositories
hildebra/lotus2
Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.
hildebra/Rarefaction
Rarefaction scripts
hildebra/MATAFILER
Metagenomic assembly, genome reconstruction and functional as well as taxonomic profiling
hildebra/sdm
Fast tool for sequence related tasks
hildebra/brainMicrobiomeRscripts
Scripts for brain microbiome analysis
hildebra/mg-tk
metagenomic toolkit - end-to-end solution for analysing metagenomes
hildebra/rdCover
calculates rd coverage; used for MATAFILER
hildebra/bioconda-recipes
Conda recipes for the bioconda channel.
hildebra/canopy2
canopy clustering of gene catalogues
hildebra/clusterMAGs
clutering of MAGs (metagenome assembled genomes) into MGS (metagenomic species)
hildebra/earlham-galaxytools
Galaxy tools and workflows developed at the Earlham Institute
hildebra/LCA
least common ancestor evaluation given tax database and
hildebra/MSAfix
hildebra/PD_helpers_R
hildebra/rtk2
binary for matrix operations used in MATAFILER