hildebra

hildebra's Stars

• spotify/annoy

  Approximate Nearest Neighbors in C++/Python optimized for memory usage and loading/saving to disk

  Language:C++13.4k3184011.2k

• diasurgical/devilution

  Diablo devolved - magic behind the 1996 computer game

  Language:C++8.8k247315920

• progschj/ThreadPool

  A simple C++11 Thread Pool implementation

  Language:C++8k229852.3k

• attractivechaos/klib

  A standalone and lightweight C library

  Language:C4.2k191102562

• madler/pigz

  A parallel implementation of gzip for modern multi-processor, multi-core machines.

  Language:C2.7k6494177

• Perl/perl5

  🐪 The Perl programming language

  Language:Perl2k13019.2k559

• ebiggers/libdeflate

  Heavily optimized library for DEFLATE/zlib/gzip compression and decompression

  Language:C1k34152175

• DerrickWood/kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++74128844275

• torognes/vsearch

  Versatile open-source tool for microbiome analysis

  Language:C++68242548124

• eggnogdb/eggnog-mapper

  Fast genome-wide functional annotation through orthology assignment

  Language:Python57719512106

• Ecogenomics/GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  Language:Python4892346682

• benjjneb/dada2

  Accurate sample inference from amplicon data with single nucleotide resolution

  Language:R479392k144

• Ecogenomics/CheckM

  Assess the quality of microbial genomes recovered from isolates, single cells, and metagenomes

  Language:Python3521438073

• Cibiv/IQ-TREE

  Efficient phylogenomic software by maximum likelihood

  Language:C++1911823744

• PacificBiosciences/pb-metagenomics-tools

  Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics

  Language:HTML181136635

• nf-core/fetchngs

  Pipeline to fetch metadata and raw FastQ files from public databases

  Language:Nextflow1541008374

• motu-tool/mOTUs

  motus - a tool for marker gene-based OTU (mOTU) profiling

  Language:Python1481210227

• GaetanBenoitDev/metaMDBG

  MetaMDBG: a lightweight assembler for long and accurate metagenomics reads.

  Language:C++1275244

• BigDataBiology/SemiBin

  SemiBin: metagenomics binning with self-supervised deep learning

  Language:Python120611912

• seqan/lambda

  LAMBDA – the Local Aligner for Massive Biological DatA

  Language:C++771313720

• xfengnefx/hifiasm-meta

  hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.

  Language:C++615378

• hildebra/lotus2

  Amplicon sequencing pipelines suitable for SSU (16S, 18S), LSU (23S, 28S) and ITS.

  Language:Perl5386517

• chrisquince/STRONG

  Strain Resolution ON Graphs

  Language:Python4781169

• ZhaoXM-Lab/metaMIC

  Assessing and Improving the quality of metagenomic assemblies

  Language:Python270154

• nolanlab/Rclusterpp

  Memory efficient clustering in R for large datasets

  Language:C++2061211

• BioPP/grapes

  (Greetings_here_is_yet_another) Rate of Adaptive Protein Evolution Software

  Language:C++93101

• metaspace2020/sm-engine

  Engine for metabolite annotation for imaging mass spectrometry

  Language:Python71065

• SushiLab/mTAGs

  Language:Python6642

• ksidorczuk/adhesiomeR

  Language:R2201

• apduncan/cvanmf

  Language:Python1100