DerrickWood/kraken2

Issues

• Ewquest to provide Kraken2 index for the FDA-ARGOS

  #839 opened a month ago by Rohit-Satyam
  1

• Trying to run the nucleotide nt Database across multiple nodes on my University's hpc cluster

  #827 opened 3 months ago by JDMirza
  3

• Unable to build db.

  #852 opened 12 days ago by abskumar
  6

• Missing species in inspect file after database build

  #853 opened 11 days ago by ksavhughes
  1

• can get mapped region in output result?

  #846 opened 11 days ago by jyl-hb
  5

• Is there a matched names.dmp and nodes.dmp file for the pre-built Kraken2 database

  #848 opened 19 days ago by PandengWang
  1

• #No preliminary seqid/taxid mapping files found, aborting.

  #851 opened 16 days ago by SamridhiVerma07
  2

• error downlading bacteria library

  #810 opened 4 months ago by B1991ing
  4

• Unexpected FTP path

  #815 opened 4 months ago by Bahnie
  3

• Test results did not meet expectations

  #849 opened 18 days ago by hedy-ella
  0

• Return of the FTP error- rsync_from_ncbi.pl: unexpected FTP path (new server?)

  #847 opened 19 days ago by Madeleine-Meyer
  0

• Terminal disappears automatically when runs classification command

  #845 opened 23 days ago by pratibha-kadam
  2

• Kraken2 does not add to the custom library *every* downloaded sequence

  #844 opened a month ago by LeandroD94
  6

• How to merge Refseq databases？

  #836 opened 2 months ago by smoothyly
  2

• discrepancy between Kraken results and BLAST hits

  #842 opened a month ago by kuldeepmore10
  4

• Low minimizer count in prebuilt NT Database leading to unclassified reads

  #841 opened a month ago by remondulos
  0

• Download speed of databases

  #840 opened a month ago by bheimbu
  0

• Kraken2 Databases

  #838 opened 2 months ago by hamzaaitabbou96
  0

• xargs: cat: terminated by signal 13

  #817 opened 4 months ago by namdeka
  4

• Only eukaryote reads are being classified with nr database

  #821 opened 3 months ago by timghaly
  4

• Issue with ITS analysis

  #837 opened 2 months ago by christopherwilliamlee
  0

• Assembly unclassified using Kraken2 but can be identified running Blastn

  #835 opened 2 months ago by mbacino
  0

• Number of reads in .kraken2.output.txt, _1.fq and _unclassfied_1.fq inconsistent with reads in input fastq file

  #834 opened 2 months ago by MAlinkous
  3

• Kraken2 custom build skips high identity added fastas

  #833 opened 2 months ago by annabel-dekker
  0

• build_db: error opening taxonomy//nodes.dmp: No such file or directory

  #832 opened 2 months ago by B1991ing
  1

• Use limited RAM to run a kraken2 analyse with nt databse.

  #823 opened 2 months ago by boyanboyue
  3

• Using kraken2 to extract/group the read/contigs based on their corresponding taxa (some kind of binning).

  #831 opened 3 months ago by kaydadaemon
  0

• When I use Kraken2 analysis, I report a bus error.

  #830 opened 3 months ago by boyanboyue
  0

• Is it possible to specify multiple databases for classification？

  #829 opened 3 months ago by smoothyly
  0

• Can we choose to load the database just once and share the memory between runs?

  #828 opened 3 months ago by d-jch
  1

• Lack of taxo.k2d in database

  #826 opened 3 months ago by Yeahji9721
  9

• Kraken2 build fails

  #824 opened 3 months ago by sachinharle
  4

• Beginner in Kraken2

  #816 opened 3 months ago by Juanloar181
  0

• Sample Report Output Format question

  #825 opened 3 months ago by Manso002
  0

• download_taxonomy.sh: line 27: rsync: command not found

  #820 opened 3 months ago by Tsingsjeen
  2

• Oral Microbiome (eHOMD) kraken-bracken database

  #822 opened 3 months ago by fconstancias
  1

• What is the size of 'bacteria' library?

  #819 opened 3 months ago by Leoaterra
  0

• NCBI has changed FASTA downloads

  #818 opened 3 months ago by ramongallego
  0

• could k2mask be used for fastq file ?

  #812 opened 4 months ago by feihongloveworld
  2

• report-minimizer-data option

  #814 opened 4 months ago by bawee
  0

• Difference between standard and minikraken databases

  #813 opened 4 months ago by minchanceking
  0

• Same process, same DB, different result

  #811 opened 4 months ago by minchanceking
  0

• Kraken2 is not creating a report file

  #807 opened 4 months ago by elliewilson9
  1

• kraken2 assigning exactly the same taxonomy at low magnitudes to very different samples

  #806 opened 5 months ago by ctuni
  1

• Error reading in hash table

  #809 opened 4 months ago by Marta2906
  0

• progress bar should be shown when running kraken-build

  #808 opened 4 months ago by feihongloveworld
  0

• Kraken2-download taxonomy

  #803 opened 5 months ago by PaolaDiGianvito
  2

• DB for Helminths and Worms

  #805 opened 5 months ago by msubirana
  0

• Humann3

  #804 opened 5 months ago by PaolaDiGianvito
  0

• When building the database, the taxid in the hash table was not checked. Only the existence of a minimizer key was queried. If the same minimizer exists in different taxid sequences, then the compare_and_set function should be executed.

  #802 opened 5 months ago by eric9n
  0