DerrickWood/kraken2

Ewquest to provide Kraken2 index for the FDA-ARGOS

Rohit-Satyam opened this issue · 3 comments

Rohit-Satyam commented

Dear @dfornika @BenLangmead

Greetings!!
Is it possible to provide FDA-ARGOS kraken2 indexes? The FDA-ARGOS Nature Com article curated some highly reliable genomes and is getting quite popular.

jenniferlu717 commented

Looking into this

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ChillarAnand commented

Any update on this? @jenniferlu717

I am planning to build the same index as well.

ChillarAnand commented

I have written a script to download all argos genbank files, convert them to fasta and add them to kraken library.

I haven't used genbank till now and I don't know how to use taxonomy data for genbank.