Pinned Repositories
clj-blend
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
core-typer
A Core Genome MLST (cgMLST) Typing Tool
intro_to_cybernetics
A computational scratchpad for working through some exercises in An Introduction to Cybernetics by W. Ross Ashby
irida-plugin-resistance-screen
Detect the presence of specific resistance genes in a sample using the IRIDA system
LexMapr
LexMapr: A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms
miseq-samplesheet-parser
Parse illumina MiSeq SampleSheet.csv files and convert to JSON
nextflow-artic-ncov2019
rosalind
My solutions to the bioinformatics problem set at rosalind.info
tree-with-metadata
Draw a phylogenetic tree, along with a table of metadata
cpo-pipeline
An analysis pipeline for the purpose of investigating Carbapenemase-Producing Organisms.
dfornika's Repositories
dfornika/core-typer
A Core Genome MLST (cgMLST) Typing Tool
dfornika/illumina-run-simulator
Tool to help test & develop fastq symlinking service
dfornika/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
dfornika/routine-sequence-qc
Pipeline for running routine quality control analyses on illumina sequence data
dfornika/amplify-vite-react-template
My Amplify Gen 2 starter application
dfornika/auspice
Web app for visualizing pathogen evolution
dfornika/bioconda-recipes
Conda recipes for the bioconda channel.
dfornika/chass-queen
Experimenting with (basic) chess engine
dfornika/cleanup-old
dfornika/cljs-starter-shadow
dfornika/clojurescript-devcontainer
dfornika/database-demo
dfornika/genomics-qc-site-demo
A demo website for displaying genomics quality control data
dfornika/genomics-services-api-schemas
dfornika/illumina-run-monitor
dfornika/memory-logger
dfornika/mikrokondo
A simple pipeline for bacterial assembly and quality control
dfornika/mob-suite
MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies
dfornika/nf-flu
Influenza genome analysis Nextflow workflow
dfornika/norovirus-blast-analysis-service
dfornika/plain-clojure-lambda
Demo of AWS Lambda built with Clojure/ClojureScript
dfornika/quarto-playground
Repo to learn quarto
dfornika/react-ag-grid-demo
dfornika/reviewme
dfornika/rrna-16s-analysis-service-fastapi
Prototype of a web-based 16S analysis server
dfornika/sequencing-runs-db
dfornika/sequencing-runs-service-clj
Clojure implementation of Sequencing Runs Service
dfornika/spring-boot-service-template
dfornika/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
dfornika/witchcraft-scratchpad
Scratchpad for learning the lambdaisland/witchcraft library for controlling Minecraft from Clojure