jenniferlu717

Staff Scientist @ Johns Hopkins University, Johns Hopkins School of Medicine, Center for Computational Biology Computational Methods in Metagenomics

Pinned Repositories

pytaxonkit
Python bindings for the TaxonKit library
Language:Python31 4 92
kraken
Kraken taxonomic sequence classification system
Language:C++212 27 135104
kraken2
The second version of the Kraken taxonomic sequence classification system
Language:C++717 29 829270
pavian
🌈 Interactive analysis of metagenomics data
Language:R388 20 11775
Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Language:C++287 13 25350
KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Language:Python315 11 8588
SkewIT
GC Skew Test for Bacterial Genomes
Language:Python27 3 32

jenniferlu717/KrakenTools
KrakenTools provides individual scripts to analyze Kraken/Kraken2/Bracken/KrakenUniq output files
Language:Python315 11 8588
jenniferlu717/Bracken
Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.
Language:C++287 13 25350
jenniferlu717/SkewIT
GC Skew Test for Bacterial Genomes
Language:Python27 3 32