DerrickWood/kraken

Issues

• Issue with PLASMID download?

  #152 opened 4 years ago by axemango
  3

• Xargs: cat: terminated by signal 13 with kraken2-build --build.

  #156 opened 3 years ago by kdbchau
  4

• Cant open file: [Errno 2] No such file or directory: 'prueba//results.spa'

  #164 opened 7 months ago by marco315176
  0

• Kraken2 error

  #163 opened 2 years ago by jsalas0798
  0

• rsync: failed to connect to ftp.ncbi.nlm.nih.gov

  #114 opened 5 years ago by narsapuramvijaykumar
  23

• rsync error

  #162 opened 2 years ago by tala-kiyani
  0

• errors with build kraken database

  #161 opened 2 years ago by chaoyanggu
  0

• kraken-build

  #118 opened 7 years ago by khuch123
  18

• Unable to run kraken2-build

  #160 opened 2 years ago by raghuramdr
  1

• problems with building kraken and kraken2 databases

  #159 opened 2 years ago by itiago
  1

• Why classified reads are contaminated and unclassified are clean reads?

  #158 opened 2 years ago by B-1991-ing
  0

• build_db: error opening taxonomy//nodes.dmp: No such file or directory 2020

  #150 opened 4 years ago by DJFast
  2

• what(): 'database_10916': File truncated

  #153 opened 3 years ago by hafizmtalha
  1

• issue with rsync_from_ncbi.pl

  #157 opened 3 years ago by lynngao
  2

• Kraken1 database exit code 137

  #155 opened 3 years ago by lskatz
  2

• xargs: cat: terminated by signal 13

  #154 opened 3 years ago by jhcuarta
  0

• Kraken max length

  #151 opened 4 years ago by JChristopherEllis
  0

• How much time should be expected for building a database by kraken2-build?

  #149 opened 4 years ago by Minh2021
  0

• Bioconda Kraken2 build standard database issue

  #148 opened 4 years ago by JLNutrition
  1

• db_sort: unable to mmap database.jdb: Cannot allocate memory

  #147 opened 4 years ago by MZNOTE
  0

• kraken2-build error

  #146 opened 4 years ago by dpak283
  2

• gzip: .gz: not in gzip format

  #144 opened 4 years ago by ShivaniTalekar
  0

• rsync_from_ncbi.pl: unexpected FTP path (new server?) for na

  #142 opened 5 years ago by mpozuelo-flomics
  1

• Question on pairend reads

  #143 opened 4 years ago by zeliy90
  0

• kraken database build time

  #124 opened 5 years ago by chloelulu
  6

• Seg fault on running Kraken2

  #140 opened 5 years ago by TimFulcher
  4

• Cannot allocate memory error despite small hash size

  #141 opened 5 years ago by joshua-theisen
  0

• Database Caching

  #131 opened 5 years ago by dcdanko
  1

• Re-building the old database

  #134 opened 5 years ago by narsapuramvijaykumar
  2

• Kraken 1.1 still reports as 1.0

  #117 opened 5 years ago by tseemann
  4

• Malformed FASTQ

  #139 opened 5 years ago by Pchaskar
  0

• Problems opening usual fasta files

  #111 opened 5 years ago by tillea
  9

• MiniKraken DB_4GB versus MiniKraken DB_8GB

  #137 opened 5 years ago by capricy
  2

• --use-wget disregarded on --standard installs

  #135 opened 5 years ago by ExplodingCabbage
  0

• Functionality to join two kraken output files together

  #130 opened 6 years ago by tayabsoomro
  6

• bin-refinement issue

  #133 opened 5 years ago by hqtdave
  0

• kraken-build NCBI pull problem

  #132 opened 5 years ago by BurchamLab
  12

• Building Greengenes Database

  #129 opened 6 years ago by AgentKumara
  1

• Strange --preload behaviour

  #128 opened 6 years ago by Freemacl
  2

• Failed to shrink the database...

  #116 opened 7 years ago by jeffreycapy
  4

• Output classifies reads but tax id is zero

  #127 opened 6 years ago by stuber
  1

• Kraken-build issues

  #125 opened 6 years ago by jianglikun
  3

• `kraken classify` stuck in D state

  #115 opened 6 years ago by emrahkirdok
  4

• kraken result kind of confusing

  #126 opened 6 years ago by chloelulu
  0

• how does kraken differentiate masked genomes

  #122 opened 7 years ago by zhaoc1
  5

• Only forward reads produced with paired output --unclassified-out option

  #123 opened 7 years ago by RJBeng
  0

• taxonomic problem ....

  #120 opened 7 years ago by xgnusr
  1

• kraken-build - Can't merge hash with different sizes

  #119 opened 7 years ago by lec49
  1

• General question about kraken workflow

  #113 opened 7 years ago by Jwaj
  1

• incomplete taxonomy levels/ranks in assignment

  #112 opened 7 years ago by m-ocejo
  0