chrissy005

Pinned Repositories

• diamond

  Accelerated BLAST compatible local sequence aligner.

  Language:C++1k37697183

• bowtie2

  A fast and sensitive gapped read aligner

  Language:C++65831426159

• microeco

  An R package for data analysis in microbial community ecology

  Language:R194336556

• kraken2

  The second version of the Kraken taxonomic sequence classification system

  Language:C++70729826271

• ranger

  A Fast Implementation of Random Forests

  Language:C++77142433193

• phyloseq

  phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

  Language:R579541.6k188

• ComplexHeatmap

  Make Complex Heatmaps

  Language:R1.3k331.1k225

• ComputationalGenomicsManual

  Robs manual for the computational genomics and bioinformatics class.

  Language:HTML1808156

• microbiome

  microbiome R package

  Language:R2843318854

• picrust2

  Code, unit tests, and tutorials for running PICRUSt2

  Language:Python31924315104

chrissy005's Repositories