xfengnefx/hifiasm-meta

Issues

• Output files for binning

  #37 opened 3 months ago by YannDussert
  5

• Extract “Tangled circles”

  #35 opened 4 months ago by Flooooooooooooower
  15

• New release for r73 and binning

  #36 opened 3 months ago by cjfields
  1

• No Output

  #34 opened 4 months ago by xubiy
  2

• Aborted (core dumped) after bin file been generated

  #33 opened 4 months ago by XueyunF
  1

• Out Of Memory job failures with --force-rs

  #32 opened 7 months ago by dluecke
  6

• hifiasm-meta exit!

  #31 opened a year ago by Giotto187
  1

• Resistance gene not assembled in primary contig file, but is present in alternate contig file

  #30 opened a year ago by sosie100
  5

• Too much RAM memory required for metagenome assembly.

  #29 opened a year ago by machalita
  5

• contig coverage

  #28 opened 2 years ago by Sung-hub
  1

• Input file?

  #27 opened 2 years ago by PeymanDerik
  3

• Question about read overlap parameters and usage

  #25 opened 2 years ago by TomHarrop
  4

• Segmentation fault with conda installed 0.3-r063.2 (hifiasm code base 0.13-r308)

  #26 opened 2 years ago by nallsing-salk
  2

• Segfaults using the conda package version hamtv0.3--h5b5514e_1

  #24 opened 2 years ago by TomHarrop
  8

• redundancy of hifiasm-meta and metaflye

  #22 opened 2 years ago by ye00ye
  8

• HiFi reads: Is it better to perform assembly before taxonomic and functional identification?

  #23 opened 2 years ago by PeymanDerik
  4

• gfa s-line

  #20 opened 2 years ago by liushanlin
  2

• Is it necessary to conduct binning after assembly with HiFi reads to get MAGs?

  #19 opened 2 years ago by ye00ye
  2

• 在不去除宿主的情况下，能否组装到宿主基因组

  #18 opened 2 years ago by ye00ye
  2

• A serious error in simulated data

  #16 opened 3 years ago by ruoyu1123
  2

• Potential for improvement: A great test dataset here!

  #8 opened 3 years ago by GabeAl
  5

• Good settings for enriched similar sequences

  #6 opened 3 years ago by suzukimicro
  8

• fail to Write GFA file

  #5 opened 3 years ago by lonestarling
  4

• Duplicate GFA links

  #17 opened 3 years ago by asl
  1

• Some warnings on compilation

  #15 opened 3 years ago by GabeAl
  1

• Update bioconda recipe to latest release

  #14 opened 3 years ago by fplazaonate
  2

• hifiasm-meta produces redundant assemblies?

  #13 opened 3 years ago by fplazaonate
  6

• General question regarding treatment of contained reads

  #12 opened 3 years ago by cjain7
  4

• How to identify the circular contigs in hifiasm-meta output

  #11 opened 3 years ago by ihbxiongjie
  1

• Problems understanding the output files

  #10 opened 3 years ago by zehanna
  2

• No circular contigs recovered

  #9 opened 3 years ago by fplazaonate
  5

• Hi-C integration?

  #7 opened 3 years ago by olekto
  3

• Extracting circular contigs

  #4 opened 3 years ago by proteinosome
  2

• Understanding which reads contribute to contigs

  #3 opened 4 years ago by dportik
  4

• GFA file size issue

  #2 opened 4 years ago by alienzj
  14