BC Cancer Canada's Michael Smith Genome Sciences Centre

Sequencing Centre for Genomics and Bioinformatics Research

Vancouver, BC, Canada

Pinned Repositories

abyss
:microscope: Assemble large genomes using short reads
Language:C++322 23 332110
btllib
📚Bioinformatics Technology Lab common code library
Language:C++25 14 516
goldrush
Linear-time de novo Long Read Assembler
Language:C++41 10 472
LongStitch
🪡Correct and scaffold assemblies using long reads
Language:Makefile55 11 518
NanoSim
Nanopore sequence read simulator
Language:Python280 19 18262
ntEdit
✏️ Genome assembly polishing & SNV detection
Language:C++70 13 199
ntHash
Fast hash function for DNA/RNA sequences
Language:C++102 19 1713
ntRoot
🌳 Human ancestry inference from genomic data
Language:Python6 4 00
RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
Language:Java109 10 779
straglr
Tandem repeat expansion detection or genotyping from long-read alignments
Language:Python124 7 6413

BC Cancer Canada's Michael Smith Genome Sciences Centre's Repositories

bcgsc/abyss
:microscope: Assemble large genomes using short reads
Language:C++322 23 332110
bcgsc/straglr
Tandem repeat expansion detection or genotyping from long-read alignments
Language:Python124 7 6413
bcgsc/ntSynt
Detecting multi-genome synteny using minimizer graph mapping
Language:Python81 7 122
bcgsc/LINKS
⛓ Long Interval Nucleotide K-mer Scaffolder
Language:Perl74 10 5916
bcgsc/ntEdit
✏️ Genome assembly polishing & SNV detection
Language:C++70 13 199
bcgsc/LongStitch
🪡Correct and scaffold assemblies using long reads
Language:Makefile55 11 518
bcgsc/HLAminer
⛏ HLA predictions from NGS shotgun data
Language:Perl54 7 2615
bcgsc/AMPlify
Attentive deep learning model for antimicrobial peptide prediction
Language:Python51 7 711
bcgsc/btllib
📚Bioinformatics Technology Lab common code library
Language:C++25 14 516
bcgsc/ntEmbd
Deep learning embedding for nucleotide sequences
Language:Python19 7 23
bcgsc/unikseq
🧬 Unique (& conserved) DNA sequence identification
Language:Perl15 5 11
bcgsc/pori_ipr_api
Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform
Language:JavaScript8 3 00
bcgsc/pori_ipr_client
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
Language:TypeScript8 4 01
bcgsc/pori_graphkb_python
[ARCHIVED] Python adapter package for querying the GraphKB API
Language:Python7 5 31
bcgsc/goldpolish
GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler
Language:C++6 8 5
bcgsc/ntRoot
🌳 Human ancestry inference from genomic data
Language:Python6 4 00
bcgsc/pori_graphkb_loader
The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API
Language:JavaScript6 5 344
bcgsc/pori_ipr_python
[ARCHIVED] Python adapter for generating reports uploaded to IPR using the PORI platform
Language:Python6 8 21
bcgsc/pori_graphkb_api
REST API for the GraphKB project
Language:JavaScript4 4 71
bcgsc/AMPd-Up
De novo antimicrobial peptide sequence generation with recurrent neural networks
Language:Python3 5 10
bcgsc/aakomp
Draft genome completeness assessment using k-mer hash based approach
Language:C++2
bcgsc/btl
:microscope: Bioinformatics Technology Lab, Genome Sciences Centre
Language:HTML2 15 143
bcgsc/ntStat
ntStat: a toolkit for statistical analysis of k-mer frequency and depth
Language:C++1 3 00
bcgsc/RICO
Language:R1
bcgsc/tr_catalog
Tandem repeat catalog from public long-read sequence assemblies
Language:Python1 4 40
bcgsc/triAMPh
TaRget Identification of AntiMicrobial Peptides with Heterogeneous graph attention networks
Language:Python1
bcgsc/pori_python
Language:Python0 8 12
bcgsc/AMPSeek
Anti-microbial property, protein structure and toxicity detection from peptide sequences
Language:Python
bcgsc/MAP
📍Microdilution Assay Processor
Language:Python1 0
bcgsc/variant_support_pipeline
Language:Nextflow