BC Cancer Canada's Michael Smith Genome Sciences Centre
Sequencing Centre for Genomics and Bioinformatics Research
Vancouver, BC, Canada
Pinned Repositories
abyss
:microscope: Assemble large genomes using short reads
arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
btllib
Bioinformatics Technology Lab common code library
goldrush
Linear-time de novo Long Read Assembler
LongStitch
Correct and scaffold assemblies using long reads
NanoSim
Nanopore sequence read simulator
ntEdit
✏️ Genome assembly polishing & SNV detection
ntHash
Fast hash function for DNA/RNA sequences
ntRoot
🌳 Human ancestry inference from genomic data
RNA-Bloom
:hibiscus: reference-free transcriptome assembly for short and long reads
BC Cancer Canada's Michael Smith Genome Sciences Centre's Repositories
bcgsc/abyss
:microscope: Assemble large genomes using short reads
bcgsc/NanoSim
Nanopore sequence read simulator
bcgsc/arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
bcgsc/ntJoin
🔗Genome assembly scaffolder using minimizer graphs
bcgsc/biobloom
Create Bloom filters for a given reference and then use it to categorize sequences
bcgsc/straglr
Tandem repeat expansion detection or genotyping from long-read alignments
bcgsc/ntSynt
Detecting multi-genome synteny using minimizer graph mapping
bcgsc/ntEdit
✏️ Genome assembly polishing & SNV detection
bcgsc/AMPlify
Attentive deep learning model for antimicrobial peptide prediction
bcgsc/goldrush
Linear-time de novo Long Read Assembler
bcgsc/ntLink
Minimizer-based assembly scaffolding and mapping using long reads
bcgsc/btllib
Bioinformatics Technology Lab common code library
bcgsc/mtGrasp
mtGrasp: de novo reference-grade mitochondrial genome assembly and standardization
bcgsc/unikseq
🧬 Unique (& conserved) DNA sequence identification
bcgsc/pori_graphkb_client
Front-end web client for the GraphKB project
bcgsc/pori_ipr_api
Integrated Pipeline Reports (IPR) API, the reporting API as part of the PORI platform
bcgsc/pori_ipr_client
Integrated Pipeline Reports (IPR) client. The web interface for the reporting application as part of PORI
bcgsc/tAMPer
tAMPer: antimicrobial peptides toxicity prediction
bcgsc/pori_graphkb_loader
The Loaders for GraphKB. Imports content from external sources via the GraphKB REST API
bcgsc/goldpolish
GoldPolish (aka GoldRush-Edit) is a long read sequence polisher used in the GoldRush assembler
bcgsc/ntRoot
🌳 Human ancestry inference from genomic data
bcgsc/pori_graphkb_schema
Shared package between the API and GUI for GraphKB which holds the schema definitions and schema-related functions
bcgsc/long_read_pog
Analysis code for a cohort of Nanopore-sequenced tumours.
bcgsc/amnatate
Draft genome completeness assessment using hash based approach
bcgsc/AMPd-Up
De novo antimicrobial peptide sequence generation with recurrent neural networks
bcgsc/btl
:microscope: Bioinformatics Technology Lab, Genome Sciences Centre
bcgsc/tr_catalog
Tandem repeat catalog from public long-read sequence assemblies
bcgsc/pori_python
bcgsc/MAP
📍Microdilution Assay Processor
bcgsc/ntStat
ntStat: a toolkit for statistical analysis of k-mer frequency and depth