bcgsc/ntJoin

Issues

• Overlap detection and edge weight

  #115 opened 3 months ago by tbusschau
  5

• File assemble / check_params does not exist

  #112 opened 4 months ago by Kaiden-exe
  5

• Invalid IUPAC characters

  #111 opened 4 months ago by Kaiden-exe
  3

• Installation failed / dependencies

  #108 opened 5 months ago by steinbrl
  6

• Assertion error leading to deletion of scaffolds output file

  #109 opened 5 months ago by psal591
  13

• High percentage of ambiguous bases.

  #107 opened 6 months ago by keith-harrison
  3

• Merged chromosomes by telomere sequence?

  #106 opened 8 months ago by dirkjanvw
  7

• ntJoin error: Sorted input specified, but the file has the following record with a different sort order than the genomeFile

  #97 opened a year ago by musaqa
  8

• installation issue

  #95 opened 2 years ago by chunlinxiao
  7

• Mann-Kendall gives error with Numpy 1.24

  #94 opened 2 years ago by COMInterop
  2

• Viral contigs

  #92 opened 2 years ago by ohan-Bioinfo
  4

• Unable to run ntJoin

  #88 opened 2 years ago by sunnyEV
  2

• Separate assigned + unassigned scaffolds

  #6 opened 5 years ago by lcoombe
  3

• /ebio/abt3/nyoungblut/.zshenv:.:1: no such file or directory: /ebio/abt3/nyoungblut/.cargo/env

  #85 opened 3 years ago by nick-youngblut
  7

• I found a big problem in ntJoin script.

  #84 opened 3 years ago by Shokusei
  2

• FileNotFoundError: [Errno 2] No such file or directory

  #76 opened 3 years ago by SuPrSh
  3

• cat: standard output: No such file or directory

  #72 opened 3 years ago by Krasnopeev
  3

• Translocation after scaffolding based on reference genome

  #70 opened 3 years ago by wuxingbo1986
  2

• source file is in invalid format

  #71 opened 3 years ago by Steven-Kemp
  5

• [2021-07-19 21:34:27] [ERROR] strain-13-plasmid.txt source file is in invalid format!

  #69 opened 3 years ago by ysawires12345678
  5

• Input file Error

  #55 opened 3 years ago by ardy20
  10

• no changes in assembly

  #54 opened 4 years ago by jacorvar
  7

• input multiple reference genome failed to parse

  #56 opened 4 years ago by yangyxt
  4

• Set up paremeters

  #60 opened 4 years ago by AMMMachado
  4

• Large scaffolds (parts of scaffolds) not assigned

  #52 opened 4 years ago by eriled
  4

• Error

  #65 opened 4 years ago by ibbaMI
  2

• ntJoin:test error

  #64 opened 4 years ago by guanttttt
  8

• Chromosome order after scaffolding

  #63 opened 4 years ago by NTNguyen13
  6

• Problem with multiple references

  #37 opened 4 years ago by matt-shenton
  16

• No output after running

  #58 opened 4 years ago by NTNguyen13
  9

• conda install the wrong package

  #57 opened 4 years ago by wuxingbo1986
  1

• Error - reference.fa source file is in invalid format!

  #46 opened 4 years ago by eriled
  5

• Conda install fails

  #44 opened 4 years ago by rungitta
  3

• Conda install fails

  #45 opened 4 years ago by rungitta
  1

• ntJoin command time -v -o

  #39 opened 4 years ago by azrasid
  9

• time: command not found... Error 127

  #38 opened 4 years ago by sadikmu
  2

• Increased assembly size

  #34 opened 4 years ago by elsemikk
  4

• make error using a container for ntJoin

  #32 opened 4 years ago by drashwinelkar
  4

• Adding sequence from the reference into gaps

  #28 opened 4 years ago by olekto
  6

• failure to install from git

  #33 opened 4 years ago by drashwinelkar
  3

• malformed bed entry?

  #27 opened 4 years ago by cistarsa
  5

• Output same as input

  #23 opened 5 years ago by ViriatoII
  8

• How will ntJoin handle gaps with Ns in a scaffold?

  #24 opened 5 years ago by rajewski
  2

• Make error after successful instalation

  #22 opened 5 years ago by ViriatoII
  3

• Question: How stable is ntJoin?

  #20 opened 5 years ago by enormandeau
  2

• Add AGP output

  #17 opened 5 years ago by lcoombe
  1

• Add gap distance estimation

  #4 opened 5 years ago by lcoombe
  1

• Add better log messages

  #3 opened 5 years ago by lcoombe
  1