Pinned Repositories
.tmux
🇫🇷 Oh My Tmux! Pretty & versatile tmux configuration made with ❤️
100-Days-Of-ML-Code
100 Days of ML Coding
2018-paper-spacegraphcats
Paper text and pipeline for "Exploring neighborhoods in large metagenome assembly graphs..."
2021-GGG298
Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
2022-GGG201b-lab
GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.
2022-GGG298
Winter 2022 - Tools for Data Intensive Research at UC Davis.
angsd-snakemake
Example snakemake repo for NGS analysis pipeline
sunnyEV's Repositories
sunnyEV/2018-paper-spacegraphcats
Paper text and pipeline for "Exploring neighborhoods in large metagenome assembly graphs..."
sunnyEV/2021-GGG298
Winter 2021, GGG 298 - Tools for Data Intensive Research - UC Davis
sunnyEV/2022-GGG201b-lab
GGG 201(b), Intro to Bioinformatics - lab section. Winter 2022 at UC Davis.
sunnyEV/2022-GGG298
Winter 2022 - Tools for Data Intensive Research at UC Davis.
sunnyEV/angsd-snakemake
Example snakemake repo for NGS analysis pipeline
sunnyEV/bayesian_stats_tutorials
sunnyEV/BayesianInference_practicals
sunnyEV/biotools
Standalone scripts that are useful for manipulating and analysing DNA sequence data
sunnyEV/coding_excercises
A public repo of coding exercises
sunnyEV/GAAS
Genome Assembly and Annotation Service code
sunnyEV/genomics_general
General tools for genomic analyses.
sunnyEV/LongRead_tutorials
Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
sunnyEV/mitogenomics
Pyhton Scripts to annotate mitochondrial genomes
sunnyEV/ML_medbioinfo
Machine Learning in Medical Bioinformatics
sunnyEV/ngs-analysis
Various scripts for sequencing data analysis
sunnyEV/NORD_practicals
sunnyEV/Online_R_learning
Online R learning for applied statistics
sunnyEV/ont-assembly-polish
ONT assembly and Illumina polishing pipeline
sunnyEV/ont_tutorial_basicqc
A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt
sunnyEV/orthosnake
snakemake script for orthology inference (prokka, orthofinder)
sunnyEV/Pore-C-Snakemake
sunnyEV/RASflow
RNA-Seq analysis workflow
sunnyEV/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
sunnyEV/rnaseq-in-the-cloud
sunnyEV/smsk_selection
Snakemake project to predict orthogroups and find patterns of postive selection with orthofinder and fastcodeml
sunnyEV/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
sunnyEV/supergenes
sunnyEV/training-collection
Collection of bioinformatics training materials
sunnyEV/tutorials-1
Tutorials on phylogenomic analyses for the ForBio Phylogenomics course
sunnyEV/UML-Tutorial