Pinned Repositories
BreakScan
A method to detect structural variations in human genome using NGS sequencing reads from multiple sequencing technologies
ngs-swift
A cloud-based framework for variant analysis with public and control-accessed sequencing data
ReferenceSamples
SARS2_variant_detection
SEQC2
FDA-led sequence quality control consortium
swiftcluster
A tool for launching and managing sge clusters for parellel computing in cloud environment
pav
Phased assembly variant caller
genome-stratifications
Stratification BED files from the Global Alliance for Genomics and Health (GA4GH) Benchmarking Team and the Genome in a Bottle Consortium. These files can be used as standard resource of BED files for use with GA4GH benchmarking tools such as hap.py to stratify true positive, false positive, and false negative variant calls based on genomic context.
giab_data_indexes
This repository contains data indexes from NIST's Genome in a Bottle project.
verkko
Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and Oxford Nanopore ultra-long reads.
chunlinxiao's Repositories
chunlinxiao/ngs-swift
A cloud-based framework for variant analysis with public and control-accessed sequencing data
chunlinxiao/SEQC2
FDA-led sequence quality control consortium
chunlinxiao/BreakScan
A method to detect structural variations in human genome using NGS sequencing reads from multiple sequencing technologies
chunlinxiao/ReferenceSamples
chunlinxiao/SARS2_variant_detection
chunlinxiao/swiftcluster
A tool for launching and managing sge clusters for parellel computing in cloud environment