Pinned Repositories
arcs
🌈Scaffold genome sequence assemblies using linked or long read sequencing data
goldrush
Linear-time de novo Long Read Assembler
LongStitch
Correct and scaffold assemblies using long reads
ntJoin
🔗Genome assembly scaffolder using minimizer graphs
ntLink
Minimizer-based assembly scaffolding and mapping using long reads
ntSynt
Detecting multi-genome synteny using minimizer graph mapping
abyss
:microscope: Assemble large genomes using short reads
AutoBioGraphers
lcoombe's Repositories
lcoombe/abyss
:microscope: Assemble large genomes using short reads
lcoombe/AutoBioGraphers
lcoombe/bioconda-recipes
Conda recipes for the bioconda channel.
lcoombe/cpsc310repopractice
lcoombe/gfftools
Scripts to work with sequence annotations in GFF3 format
lcoombe/gnavigator
Use cDNA alignments with or without genetic map information to evaluate the completeness and correctness of a de novo genome or transcriptome assembly.
lcoombe/Hackathon-App
lcoombe/homebrew-bio
:beer::microscope: Bioinformatics formulae for the Homebrew and Linuxbrew package managers
lcoombe/homebrew-science
:snowflake: Scientific formulae for Homebrew and Linuxbrew (legacy)
lcoombe/intervaltree
A mutable, self-balancing interval tree. Queries may be by point, by range overlap, or by range containment.
lcoombe/kollector
de novo targeted gene assembly
lcoombe/linuxbrew-core
:beers::penguin: Core formulae for the Linuxbrew package manager
lcoombe/MapsPractice
lcoombe/ntEdit
✏️ultra fast and scalable genome assembly polishing
lcoombe/ntJoin
🔗Genome assembly scaffolder using minimizer graphs
lcoombe/orca
:whale: Genomics Research Container Architecture
lcoombe/xmatchview
🗻 Visualization of genome/gene sequence synteny