bcgsc/LongStitch

Issues

• IndexError: list index out of range

  #82 opened 5 months ago by mmpust
  5

• [ERRORS] A helper process has finished unsuccessfully and Process pipeline: Spawner process failed.

  #78 opened 6 months ago by francicco
  2

• Conda installation is non-functional

  #80 opened 6 months ago by drdna
  2

• Unable to run LongStitch

  #81 opened 7 months ago by Oieswarya
  7

• Output files interpretation

  #79 opened 8 months ago by gforg34
  9

• import igraph as ig in ntlink_pair.py

  #77 opened 9 months ago by gforg34
  11

• Issues with module btllib in conda

  #76 opened 9 months ago by malvaradol
  8

• Input reads

  #75 opened a year ago by mikeqiu00
  4

• Socket.so: undefined symbol: Perl_xs_apiversion_bootcheck

  #70 opened a year ago by francicco
  2

• Support for HIFI data

  #71 opened a year ago by alexvasilikop
  3

• Input reads in format 'reads.fastq.gz' not found

  #69 opened 2 years ago by natforsdick
  8

• Estimating memory requirements for arks-long (core dump)

  #67 opened a year ago by Nicholas-Kron
  9

• conda can't solve (dependencies?)

  #68 opened 2 years ago by mthon
  5

• core dumped error in long-to-linked-pe step

  #63 opened 2 years ago by nirvana693
  6

• Longstitch with PacBio

  #64 opened 2 years ago by francicco
  14

• Finding Scaffold overlaps - Warning is empty

  #65 opened 2 years ago by benyoung93
  22

• tigmint_estimate_dist.py: error: the following arguments are required: READS

  #66 opened 2 years ago by Arkadiy-Garber
  2

• Conda install for longstitch

  #18 opened 3 years ago by Mondlii
  15

• Hanging for >24h on "Finding pairs" step with no output

  #62 opened 2 years ago by pmcarlton
  8

• Longstitch "std::invalid_argument"

  #60 opened 2 years ago by MBinso
  3

• output filenames?

  #61 opened 2 years ago by margaretc-ho
  2

• conda installation issues

  #59 opened 2 years ago by Laura-Alex
  3

• Longstitch stuck at "Running pairing stage of ntLink ..."

  #55 opened 2 years ago by Duda5
  6

• Allow LongStitch to accept uncompressed fasta and fastq files

  #56 opened 2 years ago by lcoombe
  1

• make: *** No rule to make target 'draft.fasta.fa', needed by 'draft.fasta.cut250.tigmint.fa'. Stop.`

  #54 opened 2 years ago by BenAawf
  3

• Problems with conda distribution of LongStitch

  #53 opened 2 years ago by BirdmanRidesAgain
  11

• MAKE help text instead of Longstitch

  #52 opened 2 years ago by mrmrwinter
  1

• N sequences in scaffolded contig

  #49 opened 2 years ago by cytham
  7

• gunzip: standard input is a terminal -- ignoring

  #48 opened 2 years ago by giuliaguidi
  6

• ntLink via brew failed

  #47 opened 2 years ago by giuliaguidi
  4

• ImportError for pybedtools

  #45 opened 3 years ago by 123chenshixin
  2

• draft assembly

  #46 opened 3 years ago by antoine4ucsd
  2

• Sort order on bed file

  #43 opened 3 years ago by skitchen19
  6

• Problems with tigment when trying to run LongStitch

  #44 opened 3 years ago by Lean-s
  7

• Add snakemake wrapper

  #40 opened 3 years ago by KristinaGagalova
  5

• Broken Pipe Error

  #36 opened 3 years ago by ChemaMD
  2

• Longstitch Freezing/"No rule to make target"

  #39 opened 3 years ago by jwalewski
  26

• Specifying -a parameter for ARCS through LongStitch

  #37 opened 3 years ago by aakashsur
  2

• tigmint_molecule MolecIdentifier module fails to be imported

  #29 opened 3 years ago by camilogarciabotero
  6

• adjusting minimap2 arguments to accommodate different types of long reads

  #27 opened 3 years ago by bishopia
  2

• quick crash due to make errors for default run.

  #26 opened 3 years ago by bishopia
  2

• Pipeline without Tigmint doesn't run

  #25 opened 3 years ago by charlesfeigin
  3

• make error

  #24 opened 3 years ago by seanschoville
  5

• $draft.cut$cut.tigmint.fa is empty

  #23 opened 3 years ago by rwhetten
  18

• Rerunning pipeline with Arks

  #21 opened 3 years ago by charlesfeigin
  2

• Make error on longstitch run

  #19 opened 3 years ago by Mondlii
  5

• longstitch output format -- scaffolds?

  #17 opened 3 years ago by RaverJay
  3

• Longstitch crashes immediately

  #16 opened 3 years ago by charlesfeigin
  12

• make: command: Command not found

  #13 opened 3 years ago by Dikaryotic
  6