Pinned Repositories
amplicon_processing
Scripts and workflows for MiSeq amplicon processing
Aplysia_Immunome
in silico survey of Aplysia californica RefSeq proteome for putative immune associated genes using OrthoFinder and InterProScan
Expression_Dynamics_AAbV
Code used for data analysis and visualization of Virology publication "Expression Dynamics of the Aplysia Abyssovirus" 2023. The purpose of this repo is for the code and analysis to be reviewed and, if need be, reproduced.
fastqc_parser
Small tool to parse and split data from fastqc output.
fOpsBet2.1_assembly
Scripts used for the assembly of the Gulf toadfish de novo genome and transcriptome assembly and annotations from PacBio HiFi Reads.
hello-world
just a test
Host_response_AAbV_Analysis
Code used for analysis of Aplysia californica response to Aplysia Abyssovirus 1 infection in neurons and gill
Kron_Aplysia_Alzheimer-s_Model
Code used for in silico study on the viability of Aplysia californica as a model organism for Alzheimer's Disease
Kron_Cohort77_CoExpression_Analysis
Code used for CoExpression Analysis on Aplysia californica sensory neurons
What-the-awk-sed
intorduction to awk and sed for biologists
Nicholas-Kron's Repositories
Nicholas-Kron/amplicon_processing
Scripts and workflows for MiSeq amplicon processing
Nicholas-Kron/Expression_Dynamics_AAbV
Code used for data analysis and visualization of Virology publication "Expression Dynamics of the Aplysia Abyssovirus" 2023. The purpose of this repo is for the code and analysis to be reviewed and, if need be, reproduced.
Nicholas-Kron/fOpsBet2.1_assembly
Scripts used for the assembly of the Gulf toadfish de novo genome and transcriptome assembly and annotations from PacBio HiFi Reads.
Nicholas-Kron/What-the-awk-sed
intorduction to awk and sed for biologists
Nicholas-Kron/Aplysia_Immunome
in silico survey of Aplysia californica RefSeq proteome for putative immune associated genes using OrthoFinder and InterProScan
Nicholas-Kron/fastqc_parser
Small tool to parse and split data from fastqc output.
Nicholas-Kron/hello-world
just a test
Nicholas-Kron/Host_response_AAbV_Analysis
Code used for analysis of Aplysia californica response to Aplysia Abyssovirus 1 infection in neurons and gill
Nicholas-Kron/Kron_Aplysia_Alzheimer-s_Model
Code used for in silico study on the viability of Aplysia californica as a model organism for Alzheimer's Disease
Nicholas-Kron/Kron_Cohort77_CoExpression_Analysis
Code used for CoExpression Analysis on Aplysia californica sensory neurons
Nicholas-Kron/Kron_Cohort77_Differential_Expression_Analysis
Code used to analyze data from a time series RNAseq experiment in Aplysia californica senory neurons at the University of Miami RSMAS
Nicholas-Kron/MBE702report
Nicholas-Kron/PCfB_FALL_2019_Tidyverse
A short introduction to the R packages dplyr and tidyr from the Tidyverse suite.
Nicholas-Kron/PopGen
Scripts for CompBio-athon PopGen instructional sessions: SNP analyses, Population Differentiation analyses, Outlier analyses & GWAS, eQTL analyses
Nicholas-Kron/RNAseq
Scripts for CompBio-athon RNAseq instructional sessions: QC & Alignment, Differential Gene Expression, BLAST & Annotation, WGCNA
Nicholas-Kron/tidytuesday
All of the Tidy Tuesday projects from the MBE Coding Club