KristinaGagalova
https://kristinagagalova.github.io/MyBioinformaticsAdventure/about
Research scientistPerth, Western Australia
Pinned Repositories
hpc_performance
Scripts to estimate benchmarking performance HPC clusters -Slurm workload manager
Maker2NCBI
Process and submit output from MAKER to NCBI
MassFileHandler
Set of scripts to manage fast5 and pod5 files from Nanopore sequencing
my_CV
My research and professional experience in Bioinformatics
PacB-flow
:ocean: :link: PacBio long reads assebly workflow based on Nextflow
pante2-legacy
🍄 🧬An (improved) pipeline for predicting and masking transposable elements in multiple fungal genomes.
Spruce_genomes
Updated results of the spruce giga-genomes paper - Gagalova et al., 2022
SpruceGenomeAnnotation
Methods used for the annotation of PG29, WS77111 and Q903 :evergreen_tree:
KristinaGagalova's Repositories
KristinaGagalova/hpc_performance
Scripts to estimate benchmarking performance HPC clusters -Slurm workload manager
KristinaGagalova/Maker2NCBI
Process and submit output from MAKER to NCBI
KristinaGagalova/MassFileHandler
Set of scripts to manage fast5 and pod5 files from Nanopore sequencing
KristinaGagalova/my_CV
My research and professional experience in Bioinformatics
KristinaGagalova/PacB-flow
:ocean: :link: PacBio long reads assebly workflow based on Nextflow
KristinaGagalova/pante2-legacy
🍄 🧬An (improved) pipeline for predicting and masking transposable elements in multiple fungal genomes.
KristinaGagalova/Spruce_genomes
Updated results of the spruce giga-genomes paper - Gagalova et al., 2022
KristinaGagalova/SpruceGenomeAnnotation
Methods used for the annotation of PG29, WS77111 and Q903 :evergreen_tree:
KristinaGagalova/awesome-nanopore
A curated list of awesome nanopore analysis tools.
KristinaGagalova/bioconda-recipes
Conda recipes for the bioconda channel.
KristinaGagalova/deep-DNArt
repository of the code produced during the Copenhagen Bioinformatics Hackaton
KristinaGagalova/my_RShiny
RShiny app projects
KristinaGagalova/MyBioinformaticsAdventure
More on my research and PhD projects
KristinaGagalova/PHD_projects
spruce projects during my PhD thesis
KristinaGagalova/PhyloGeneFamilies
Cluster gene families and display phylogeny tree by species
KristinaGagalova/weevil_genome_assembly
Supplementary data and scripts used in the manuscript :cockroach:
KristinaGagalova/ECPred
KristinaGagalova/how_are_we_stranded_here
Check strandedness of RNA-Seq fastq files
KristinaGagalova/Jbrowse-tools
Scripts to process samples for JBrowse2
KristinaGagalova/MycoProcessor
KristinaGagalova/Nextflow-Workflow-Template
Template example of modular structure in Nextflow
KristinaGagalova/r-novice-inflammation
Programming with R
KristinaGagalova/seqrenamer
Renames ids in fasta, gff3, tsv, and csv files.