Pinned Repositories
autoautoAug
Execute Augustus' autoAug.pl automatically if no --singleCPU option is set.
autotrim
Trimming (overrepresented k-mers from) multiple fastq files
backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
busco2snap
Create a SNAP model from BUSCO output
DBG2OLC
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
figtree
Automatically exported from code.google.com/p/figtree
fqs-tools
FastQ Screen like tools
maker-functional
Adjustment of MAKER's functional annotation scripts
MGSE
Mapping-based Genome Size Estimation
wtdbg2-racon-pilon
Wrapper for overlap assembly of long reads and polishing
schellt's Repositories
schellt/backmap
Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size
schellt/wtdbg2-racon-pilon
Wrapper for overlap assembly of long reads and polishing
schellt/busco2snap
Create a SNAP model from BUSCO output
schellt/autoautoAug
Execute Augustus' autoAug.pl automatically if no --singleCPU option is set.
schellt/autotrim
Trimming (overrepresented k-mers from) multiple fastq files
schellt/DBG2OLC
The genome assembler that reduces the computational time of human genome assembly from 400,000 CPU hours to 2,000 CPU hours, utilizing long erroneous 3GS sequencing reads and short accurate NGS sequencing reads.
schellt/figtree
Automatically exported from code.google.com/p/figtree
schellt/fqs-tools
FastQ Screen like tools
schellt/maker-functional
Adjustment of MAKER's functional annotation scripts
schellt/MGSE
Mapping-based Genome Size Estimation
schellt/msat-loci-identification
De novo microsatellite loci identification pipeline as used in Schröder et al. (2021)
schellt/RAILS
RAILS and Cobbler