Pinned Repositories
abyss
:microscope: Assemble large genomes using short reads
adapterremoval
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
bamql
Query language for filtering SAM/BAM reads
biopython
Official git repository for Biopython (converted from CVS)
bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
canu
A single molecule sequence assembler for genomes large and small.
cdhit
Automatically exported from code.google.com/p/cdhit
Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
GenomicRanges
Container class to represent genomic locations and support genomic analysis
gentoo
The Gentoo ebuild repository mirror
mmokrejs's Repositories
mmokrejs/abyss
:microscope: Assemble large genomes using short reads
mmokrejs/adapterremoval
AdapterRemoval v2 - rapid adapter trimming, identification, and read merging
mmokrejs/bamql
Query language for filtering SAM/BAM reads
mmokrejs/biopython
Official git repository for Biopython (converted from CVS)
mmokrejs/bwa
Burrow-Wheeler Aligner for pairwise alignment between DNA sequences
mmokrejs/canu
A single molecule sequence assembler for genomes large and small.
mmokrejs/cdhit
Automatically exported from code.google.com/p/cdhit
mmokrejs/Fastaq
Python3 scripts to manipulate FASTA and FASTQ files
mmokrejs/GenomicRanges
Container class to represent genomic locations and support genomic analysis
mmokrejs/gentoo
The Gentoo ebuild repository mirror
mmokrejs/gofasta
mmokrejs/keepassxc
KeePassXC is a cross-platform community-driven port of the Windows application “Keepass Password Safe”.
mmokrejs/lib2bit
A C library for accessing 2bit files
mmokrejs/libdeflate
Heavily optimized library for DEFLATE/zlib/gzip compression and decompression
mmokrejs/LINKS
⛓Long Interval Nucleotide K-mer Scaffolder
mmokrejs/matplotlib
matplotlib: plotting with Python
mmokrejs/md5
MD5 offers basic cryptographic facilities for Lua 5.1.
mmokrejs/nanocorrect
Experimental pipeline for correcting nanopore reads
mmokrejs/nanopolish
Signal-level algorithms for MinION data
mmokrejs/NxTrim
Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.
mmokrejs/sci
[MIRROR] Gentoo Science Overlay
mmokrejs/seqtk
Toolkit for processing sequences in FASTA/Q formats
mmokrejs/sga
de novo sequence assembler using string graphs
mmokrejs/SOAPdenovo2
Next generation sequencing reads de novo assembler.
mmokrejs/spades
SPAdes Genome Assembler http://cab.spbu.ru/spades
mmokrejs/tigmint
⛓ Correct misassemblies using linked AND long reads
mmokrejs/TPSdownloader
Fetch TPS cyclases information from various sources
mmokrejs/transXpress-snakemake
transXpress: a Snakemake pipeline for rapid de novo transcriptome assembly and annotation
mmokrejs/whisper-ctranslate2
Whisper command line client compatible with original OpenAI client based on CTranslate2.