Pinned Repositories
Ecological-Genomics-Northern-Krill
This repository contains scripts and code used to perform genome assembly and population genomics analyses of the Northern krill.
RawHash
RawHash is the first mechanism that can accurately and efficiently map raw nanopore signals to large reference genomes (e.g., a human reference genome) in real-time without using powerful computational resources (e.g., GPUs). Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440)
gosling.js
Grammar of Scalable Linked Interactive Nucleotide Graphics
SonyMDRemote
bonito
A PyTorch Basecaller for Oxford Nanopore Reads
m6ABasecaller
An m6A-aware basecalling model to detect m6A modifications at single nucleotide resolution in individual reads (Cruciani, Delgado-Tejedor, Pryszcz et al., BioRxiv 2023)
spaln
Genome mapping and spliced alignment of cDNA or amino acid sequences
bakta
Rapid & standardized annotation of bacterial genomes, MAGs & plasmids
xRead
An incremental overlapping graph construction approach
TileDB-VCF
Efficient variant-call data storage and retrieval library using the TileDB storage library.
andreaswallberg's Repositories
andreaswallberg/Ecological-Genomics-Northern-Krill
This repository contains scripts and code used to perform genome assembly and population genomics analyses of the Northern krill.