*** There are known bugs, please do not use this for any serious work until unit tests have been completed ***
Compress and index (two-ways) the FASTQ with bgzip
:
cat test.fastq | fqme index --output test.fastq.gz.fqi -n 100 | bgzip -c -i --index-name test.fastq.gz.gzi > test.fastq.gz
Extract entries:
fqme extract --input test.fastq.gz -s 100 -e 102
fqme --help
cargo build --release
The executable is located in:
target/release/fqme
cargo test