fawaz-dabbaghieh
PhD students in Bioinformatics. Mostly working with graphs and pangenomes
HHU/UKDDüsseldorf, Germany
Pinned Repositories
karyoploteR
karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome
academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
bubble_gun
extgfa
External GFA (on disk) representation of GFA files (proof of concept)
fawaz-dabbaghieh.github.io
gfa_subgraphs
Extracts subgraphs or components from a graph in GFA format
kmer-counter
Count kmers with a more efficient (faster) hash table
msa_to_gfa
Small python program to turn MSA to GFA v1 with paths of original sequences
PanPA
PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
smith_waterman_cython
A test implementation of Smith Waterman algorithm with Cython
fawaz-dabbaghieh's Repositories
fawaz-dabbaghieh/bubble_gun
fawaz-dabbaghieh/gfa_subgraphs
Extracts subgraphs or components from a graph in GFA format
fawaz-dabbaghieh/PanPA
PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.
fawaz-dabbaghieh/extgfa
External GFA (on disk) representation of GFA files (proof of concept)
fawaz-dabbaghieh/msa_to_gfa
Small python program to turn MSA to GFA v1 with paths of original sequences
fawaz-dabbaghieh/smith_waterman_cython
A test implementation of Smith Waterman algorithm with Cython
fawaz-dabbaghieh/fawaz-dabbaghieh.github.io
fawaz-dabbaghieh/kmer-counter
Count kmers with a more efficient (faster) hash table
fawaz-dabbaghieh/academicpages.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
fawaz-dabbaghieh/batch_effects_shiny_app
A Shiny app that installs epigenomic data from DeepBlue and allows the user to run batch effect analysis on it
fawaz-dabbaghieh/cobsi_index_download
Generating an information table and downloading files from the COBSI index
fawaz-dabbaghieh/dsb-meeting.github.io
Web site for dsb meetings
fawaz-dabbaghieh/bioconda-recipes
Conda recipes for the bioconda channel.
fawaz-dabbaghieh/metadata_fixer
a semi-automated pipeline for fixing metadata related from experiments
fawaz-dabbaghieh/PanPA-rtd
Read the docs for PanPA
fawaz-dabbaghieh/theupsetkmer
Create Upset diagrams from k-mer sets
fawaz-dabbaghieh/VAPiD
VAPiD: Viral Annotation and Identification Pipeline