Pinned Repositories
AudioReactiveLED
CASH
Compare and shuffle heterozygosity using BED and VCF files
CircosAlignmentPlotter
Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
hap_phase
Phase haplotypes from at least n samples using HapCut2 and a VCF
HapPy
Haploidy and Size Completeness Estimation
HilMa
Hilbert Mapper is a C++ implementation of Hilbert's space filling curve to represent read coverage on genomic sequences. Although it can be used to represent any unidimensional vector of positive numerical data.
PLastZ
Parallel Lastz
PriDe
PriDe: Primer Design tool
runGATK
Small GATK alignment and variant calling pipeline using python
SAVi
Simple Alignment Viewer
AntoineHo's Repositories
AntoineHo/HapPy
Haploidy and Size Completeness Estimation
AntoineHo/SAVi
Simple Alignment Viewer
AntoineHo/CircosAlignmentPlotter
Converts a part of an alignment (.PAF perhaps others sometimes) to a Circos image using BED and fasta files.
AntoineHo/CASH
Compare and shuffle heterozygosity using BED and VCF files
AntoineHo/HilMa
Hilbert Mapper is a C++ implementation of Hilbert's space filling curve to represent read coverage on genomic sequences. Although it can be used to represent any unidimensional vector of positive numerical data.
AntoineHo/runGATK
Small GATK alignment and variant calling pipeline using python
AntoineHo/hap_phase
Phase haplotypes from at least n samples using HapCut2 and a VCF
AntoineHo/PLastZ
Parallel Lastz
AntoineHo/PriDe
PriDe: Primer Design tool
AntoineHo/AudioReactiveLED
AntoineHo/bioinfo-tools
Repo of scripts I use(d) for various tasks
AntoineHo/BWISE
de Bruijn Workflow using Integral information of Short pair End reads
AntoineHo/COCOA
Coverage Of COntigs Alignment
AntoineHo/dotplot
Produce .svg dotplot from .paf alignement
AntoineHo/genome_evolution_bdelloids_scripts
AntoineHo/miniasm
Ultrafast de novo assembly for long noisy reads (though having no consensus step)
AntoineHo/MstrThss
AntoineHo/PlayAssembly
Test assembly
AntoineHo/PRP
AntoineHo/seqan2.4.0
Copy of seqan
AntoineHo/STRIP
SimulaTe RestrIction Profile