mcveanlab/mccortex

Issues

• clang: error: linker command failed with exit code 1 (use -v to see invocation)

  #96 opened 2 years ago by abrozzi
  0

• Make *** Error 255

  #95 opened 2 years ago by ycode-sh
  0

• Script availability in conda recipe

  #94 opened 3 years ago by mbhall88
  6

• How to build a graph from input file?

  #93 opened 3 years ago by jermp
  1

• Best practice for large datasets?

  #92 opened 4 years ago by BaiweiLo
  4

• mccortex unitigs: "Fatal Error: Couldn't read 'Coverages': expected 4; recieved: 0"

  #91 opened 4 years ago by karel-brinda
  0

• mccortex unitigs: "Fatal Error: Not enough kmers in hash" or "Fatal Error: Hash table is full"

  #90 opened 4 years ago by karel-brinda
  2

• Hash table is full

  #89 opened 4 years ago by chatcrawler
  0

• ld cannot find libcurses.so

  #88 opened 5 years ago by markcharder
  4

• Problem running make

  #86 opened 5 years ago by Tj-Idowu
  2

• mccortex subgraph behaviour

  #87 opened 5 years ago by izaak-coleman
  0

• Sorted flag in .ctx header

  #85 opened 5 years ago by izaak-coleman
  2

• mccortex31 check: report error if records incomplete.

  #84 opened 5 years ago by izaak-coleman
  4

• Is there a way to rename colors?

  #83 opened 6 years ago by winni2k
  0

• Is it possible to extract kmers in bubbles?

  #82 opened 6 years ago by zeeev
  5

• Bug in `mccortex join` with --sort option

  #80 opened 6 years ago by winni2k
  0

• Assert error during graph cleaning

  #79 opened 6 years ago by lucaptra
  0

• Build log - identifying how many kmers were added from different files

  #78 opened 6 years ago by alexa-hks
  0

• Problem during installation

  #75 opened 6 years ago by mbhall88
  2

• Build without sudo apt install

  #70 opened 6 years ago by ShawnCone
  2

• Compilations fails: "city.c:405:10: fatal error: 'citycrc.h' file not found"

  #76 opened 6 years ago by jonchang
  3

• Release `1.0` tar compiles as version `v0.0.3-610-g400c0e3`

  #73 opened 6 years ago by winni2k
  1

• Link creation fails on minimal example?

  #74 opened 6 years ago by winni2k
  4

• Release as conda package

  #72 opened 6 years ago by winni2k
  4

• Release tar does not compile

  #71 opened 6 years ago by winni2k
  2

• Finding sequences not in the reference genome

  #69 opened 6 years ago by inti
  0

• out of memory

  #67 opened 7 years ago by jdmontenegro
  6

• Mysterious parameters for plot-covg-hist.R script

  #68 opened 7 years ago by mbhall88
  1

• Error message during installation

  #53 opened 8 years ago by abeu9727
  2

• Tackle too much variation in a region

  #66 opened 7 years ago by dimitrisarnellos
  0

• Creating cortex graph from more than two FASTQ files

  #65 opened 7 years ago by winni2k
  3

• interpretation of graph build log

  #58 opened 7 years ago by roddypr
  5

• Links files are really big

  #64 opened 7 years ago by winni2k
  2

• No output in vcfs directory.

  #59 opened 7 years ago by IdaBonde
  1

• long reads

  #60 opened 7 years ago by jdmontenegro
  1

• No reference option for bubbles/calls2vcf

  #63 opened 7 years ago by carlyprior
  3

• Pjoin memory allocation error

  #62 opened 7 years ago by carlyprior
  3

• Fix README

  #54 opened 7 years ago by iqbal-lab
  0

• Cygwin make fails due to missing _O_BINARY error in xxHash

  #61 opened 7 years ago by ffranr
  1

• zero coverage genotyping

  #57 opened 8 years ago by hcdenbakker
  2

• Output interpretation

  #55 opened 8 years ago by abeu9727
  3

• make-pipeline.pl error

  #56 opened 8 years ago by yeban
  1

• What does mccortex build do if it encounters Ns in the read?

  #52 opened 8 years ago by yeban
  2

• mccortex clean's help output

  #48 opened 8 years ago by yeban
  1

• Cleaning failing with Assert Failed db_graph_alloc(): num_of_cols > 0

  #47 opened 8 years ago by Phelimb
  5

• reads command produces an additional bogus file.

  #51 opened 8 years ago by yeban
  1

• Help output shows version 0.0.3.

  #50 opened 8 years ago by yeban
  1

• Behaviour of popbubbles command.

  #49 opened 8 years ago by yeban
  1

• Use of -G option of contigs command.

  #46 opened 8 years ago by yeban
  1

• vcfcov and --nkmers

  #45 opened 8 years ago by peterdfields
  1