de-bruijn-graphs
There are 29 repositories under de-bruijn-graphs topic.
medvedevgroup/SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
mcveanlab/mccortex
De novo genome assembly and multisample variant calling
GATB/gatb-core
Core library of the Genome Analysis Toolbox with de-Bruijn graph
medvedevgroup/TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes
jermp/fulgor
Fulgor is a fast and space-efficient colored de Bruijn graph index.
prophyle/prophasm
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
Colelyman/kleuren
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
happywithxpl/GeneMiner
GeneMiner: a tool for extracting phylogenetic markers from next-generation sequencing data
morispi/HG-CoLoR
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
camillescott/goetia
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
mcveanlab/Corticall
Germline DNM caller based on LdBG assembly of pathogens
ratschlab/genome_graph_annotation
Sparse Binary Relation Representations for Genome Graph Annotation
zmmason/BINF
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
saishsali/cse549
Computational Biology Assignments
DenisVerkhoturov/metamer
Genome assembler de novo that uses De Bruijn graph.
hejj16/Gene-Assembing-Program
A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence
Mrktn/still-lifes
Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)
aKhfagy/data-structures-algorithms
What I learned from Data Structures and Algorithms Specialization on Coursera.
francofrizzo/marvellous-sequences
Souce code for my MSc Thesis in Computer Science “Nested Marvellous Sequences”
Sarah-Hesham-2022/De-Bruijn-Graph-for-Genome-Assembly
Data Analysis for Genomics, De Bruijn Graph for Genome Assembly.
DPDmancul/BCALM-viewer
Mirror of https://gitlab.com/DPDmancul/bcalm-viewer
DPDmancul/closed-unitigs
Mirror of https://gitlab.com/DPDmancul/closed-unitigs
jermp/fulgor-benchmarks
Benchmarks and evaluation scripts for the Fulgor index.
Louis-MG/Metadbgwas
Beginig of the expansion of DBGWAS to a metagenomic scale.
ryought/dbgphmm
Probabilistic genome assembler based on de Bruijn Graph and profile HMM
Sarah-Hesham-2022/De-Bruijn-Graph-Chain-Merging-Compacting
Data Analysis for Genomics, De Bruijn Graph Chain Merging Compacting.
Sarah-Hesham-2022/Euler-Path-for-Genome-Assembly
Data Analysis for Genomics, Euler Path for Genome Assembly.