mcveanlab/mccortex

Issues

• Add FAQ

  #44 opened 7 years ago
  3

• 2-color cortex?

  #43 opened 8 years ago
  3

• Breakpoint ref filter

  #41 opened 8 years ago
  1

• Fatal Error: Hash table is full

  #40 opened 8 years ago
  3

• Typo in wiki Graph-Construction

  #39 opened 9 years ago
  1

• No "-s" option cf. "If neither -t or -s specified, just saves output statistics"

  #38 opened 9 years ago
  1

• Assert Failed assem2str(): strlen(assem_stop_str[assem]) < size

  #37 opened 9 years ago
  1

• Typo in 'inferedges' --help

  #36 opened 9 years ago
  0

• Add links to papers in CITING section

  #35 opened 9 years ago
  1

• Missing colon in --seq2 example in Wiki

  #34 opened 9 years ago
  1

• Overlapping paired-end reads

  #33 opened 9 years ago
  3

• Make a new pre-release

  #32 opened 9 years ago
  1

• bcftools doesn't compile with gcc 4.9 on MacOSX

  #31 opened 8 years ago
  3

• server occasionally returns edges that aren't valid ints

  #29 opened 9 years ago
  1

• server occasionally returns invalid JSON

  #28 opened 9 years ago
  2

• Output contigs in GFA format?

  #27 opened 9 years ago
  2

• missing tab means Bandage can't read mccortex GFA

  #26 opened 9 years ago
  4

• Generate plots and a report from pipeline

  #25 opened 9 years ago
  0

• New command: query

  #24 opened 9 years ago
  0

• Graph format should use JSON header

  #23 opened 9 years ago
  0

• Buffered graph loading

  #22 opened 9 years ago
  0

• pipeline should have option to leave out inferedges

  #21 opened 9 years ago
  0

• GFA output should include links as paths

  #20 opened 9 years ago
  0

• VCF annotation/filtering

  #19 opened 9 years ago
  0

• Pipeline test occasionally fails

  #18 opened 9 years ago
  1

• mmap failing for large populations

  #17 opened 9 years ago
  0

• Write a server

  #16 opened 9 years ago
  4

• Genotype a VCF

  #15 opened 9 years ago
  1

• Loading interleaved files assumes first read is first

  #14 opened 9 years ago
  0

• Breakpoint caller should use novel kmers

  #13 opened 9 years ago
  0

• Generate links info for reference sequence

  #12 opened 9 years ago
  0

• Reduce peak memory used by `thread`

  #11 opened 9 years ago
  0

• Bubble caller: don't report serial bubbles

  #10 opened 9 years ago
  1

• Add common arg to configure walking: -a,--assembly

  #9 opened 9 years ago
  0

• Link files should use bgzf block compression

  #8 opened 9 years ago
  0

• Fatal error in pipeline

  #7 opened 9 years ago
  2

• Variant calling with paired-end reads fails

  #5 opened 10 years ago
  3

• Bug: input file names containing colons not accepted

  #4 opened 10 years ago
  1

• Feature request: add verbosity control

  #3 opened 10 years ago
  2

• Contig failing on ctx63 when path colors above 0 used

  #2 opened 10 years ago
  1

• ctx63 clean can't read "magic word"

  #1 opened 11 years ago
  1