zeeev

pacbioWashington

Pinned Repositories

Platinum-Pedigree-Datasets
18 2 30
Platinum-Pedigree-Inheritance
Language:Rust3 2 01
DASVC
De-novo Assembly Structural Variant Caller
Language:C++13 1 14
mergeSVcallers
heuristics to merge structural variant calls in VCF format.
Language:C++36 8 95
minimap
Experimental tool to find approximate mapping positions between long sequences
Language:C7 2 02
popFastaaa
Simple stand-alone programs for analysis of aligned Multi-FASTA formated files.
Language:C++2 3 02
smartie-sv
calling SVs from Blasr contig level alignments
Language:C++54 3 1123
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Language:C++20 9 116
wham
Structural variant detection and association testing
Language:C++106 18 4925
ZevRTricks
Next Gen Seq and Plotting
Language:R8 2 010

zeeev's Repositories

zeeev/wham
Structural variant detection and association testing
Language:C++106 18 4925
zeeev/smartie-sv
calling SVs from Blasr contig level alignments
Language:C++54 3 1123
zeeev/mergeSVcallers
heuristics to merge structural variant calls in VCF format.
Language:C++36 8 95
zeeev/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
Language:C++20 9 116
zeeev/DASVC
De-novo Assembly Structural Variant Caller
Language:C++13 1 14
zeeev/minimap
Experimental tool to find approximate mapping positions between long sequences
Language:C7 2 02
zeeev/bamPals
an assortment of methods for bam|sam|cram files
Language:C5 1 00
zeeev/bevel
Working toward a probabilistic MSA tool
Language:C5 6 10
zeeev/zk_tools
my bioinformatics code
Language:Perl5 1 0
zeeev/snakePit
useful snakemake recipes - mostly cluster based
Language:Python3 2 0
zeeev/popFastaaa
Simple stand-alone programs for analysis of aligned Multi-FASTA formated files.
Language:C++2 3 02
zeeev/fastqi
Language:C++1 1 1
zeeev/mcutils
Language:C++1 1 01
zeeev/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
Language:C1 1 0
zeeev/actc
Align subreads to ccs reads
Language:C++0 0
zeeev/AGP_FAIL
Does your FASTA match your AGP?
Language:C++2 0
zeeev/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0
zeeev/BitVector
BitVector Implementation in Nim
Language:Nim1 0
zeeev/bloom
Automatically exported from code.google.com/p/bloom
Language:C++1 1
zeeev/ccs
CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
0 0
zeeev/DALIGNER
Find all significant local alignments between reads
Language:C1 0
zeeev/dow
day of the week ^DJI analysis
Language:Nim1 0
zeeev/FALCON-Phase
FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds
Language:C2 0
zeeev/Flye
Fast and accurate de novo assembler for single molecule sequencing reads
Language:C++2 0
zeeev/GenericStack
Generic Stack in C
Language:C2 0
zeeev/KDTree
A KD-Tree designed for chaining DNA alignments
Language:C++2 0
zeeev/libgff
A simple GFF/GTF parsing library in C++
Language:C++0 0
zeeev/pbbioconda
PacBio Secondary Analysis Tools on Bioconda
1 0
zeeev/skera
SKERA
0 0
zeeev/TrioBinning
Scripts for manually classifying reads and make figures
Language:R2 0