Pinned Repositories
abeona
abeona -- Abeona is the goddess of outward graph traversal
cortexpy
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
DM
DistributedMake - a perl library for pipelining with GNU make
GLPhase
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
hapfuse
A fast haplotype ligation tool for VCF/BCF files
htslibpp
C++ wrapper for the htslib C library
streaming_pileupy
Create multi-sample text-pileups of streaming SAM/BAM files.
subsetREFERENCE
This is a simple tool for subsetting sites from a WTCCC style haplotypes file.
vcfPhasedBreakMulti
boost::spirit::qi based VCF GT field parser for breaking multiallelic variants into multiple biallelic variants
winni2k's Repositories
winni2k/GLPhase
A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples
winni2k/abeona
abeona -- Abeona is the goddess of outward graph traversal
winni2k/cortexpy
A Python API for manipulating (Mc)Cortex de novo assembly graph and link data
winni2k/streaming_pileupy
Create multi-sample text-pileups of streaming SAM/BAM files.
winni2k/winni2k.github.io
Personal homepage of Warren W. Kretzschmar
winni2k/hapfuse
A fast haplotype ligation tool for VCF/BCF files
winni2k/2021-11-29_tetyos-ddpcr
Modeling ddpcr data with a Bayesian model
winni2k/adventofcode2020
winni2k/awesome-sequencing-tech-papers
A collection of publications on comparison of high-throughput sequencing technologies.
winni2k/bifrost
Bifrost: Highly parallel construction and indexing of colored and compacted de Bruijn graphs
winni2k/bioconda-recipes
Conda recipes for the bioconda channel.
winni2k/BYVSTZP_2020
This repository contains the code for reproducing all the results and figures from the preprint "Isoform specificity in the mouse primary motor cortex".
winni2k/configs
Config files for setting up my work environment
winni2k/cookiecutter-analysis
winni2k/csv_to_sru
winni2k/docker-r
winni2k/measureAggregateRsquared
measureAggregateRsquared measures aggregate r squared from imputed gen files
winni2k/micropython-lib
Core Python libraries ported to MicroPython
winni2k/MonoVar
Single nucleotide variant (SNV) detection and genotyping algorithm for single-cell DNA sequencing data
winni2k/MonovarNG
Monovar but better
winni2k/msprime
A reimplementation of Hudson's classical ms simulator for modern data sets.
winni2k/pigglet
The Phylogenetic Inference and Genotyping from Genotype Likelihoods Tool
winni2k/rebalance
A portfolio rebalancing tool.
winni2k/rethinking
Results of working through Statistical Rethinking, 2nd edition, by Richard McElreath
winni2k/SCIPhI
winni2k/Signaloid-Demo-General-CXX
A template to help you start a C++ project on Signaloid's cloud platform.
winni2k/sinto
Tools for single-cell data processing
winni2k/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
winni2k/tskit
The tree sequence toolkit
winni2k/velocyto.py
RNA velocity estimation in Python