Pinned Repositories
Adventures_in_Poolseq
Angst_etal_2022_MolEcol
Scripts used in Angst et al. (2022)
Fields_etal_2015_MolEcol
Fields_etal_2022_MBE
parallel_snippets
stdpopsim
A library of standard population genetic models
peterdfields's Repositories
peterdfields/Fields_etal_2022_MBE
peterdfields/Angst_etal_2022_MolEcol
Scripts used in Angst et al. (2022)
peterdfields/parallel_snippets
peterdfields/stdpopsim
A library of standard population genetic models
peterdfields/3DFI
The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
peterdfields/alphamissense
peterdfields/Angst_etal_2023_G3
Scripts used in Angst et al. (2023)
peterdfields/arabidopsis_numt-1
Analysis of Arabidopsis thaliana Chromosome 2 numt
peterdfields/awk_oneliners
peterdfields/Bash-Oneliner
A collection of handy Bash One-Liners and terminal tricks for data processing and Linux system maintenance.
peterdfields/bash_oneliners
peterdfields/Col-CEN
Resources for the Col-CEN reference genome assemblies
peterdfields/cs-nf-pipelines
The Jackson Laboratory Computational Sciences Nextflow based analysis pipelines
peterdfields/Daphnia_metacommunity
peterdfields/deepconsensus
DeepConsensus uses gap-aware sequence transformers to correct errors in Pacific Biosciences (PacBio) Circular Consensus Sequencing (CCS) data.
peterdfields/DeepMod2
DeepMod that works on Guppy or Tombo generated FAST5 files
peterdfields/degenotate
peterdfields/diploSHIC
peterdfields/foldseek
Foldseek enables fast and sensitive comparisons of large structure sets.
peterdfields/graph_peak_caller
ChIP-seq peak caller for reads mapped to a graph-based reference genome
peterdfields/grenedalf
Toolkit for Analyzing Allele Frequencies of Pool-Sequenced Samples, e.g., in Evolve and Resequence experiments
peterdfields/homotools
peterdfields/latex-nihbiosketch
A LaTeX class implementing the new NIH Biographical Sketch Format
peterdfields/locator
deep learning prediction of geographic location from individual genome sequences
peterdfields/radeontop
peterdfields/redmask
Genome assembly soft-masking using Red (REpeat Detector)
peterdfields/rna-seq-pop
Snakemake workflow for Illumina RNA-sequencing experiments, including variant calling and more - relating to population genetics and insecticide resistance
peterdfields/Silene-Invasive-Data
peterdfields/transpecies_polymorphism_manuscript
peterdfields/TransPi
TransPi – a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly