Pinned Repositories
Adventures_in_Poolseq
Angst_etal_2022_MolEcol
Scripts used in Angst et al. (2022)
Fields_etal_2015_MolEcol
Fields_etal_2022_MBE
parallel_snippets
stdpopsim
A library of standard population genetic models
peterdfields's Repositories
peterdfields/Fields_etal_2015_MolEcol
peterdfields/3d-dna
3D de novo assembly (3D DNA) pipeline
peterdfields/appliedgenomics2018
Materials for Spring 2018 Applied Genomics Course
peterdfields/arabidopsis_mitogenome
Scripts used in assembly of Arabidopsis thaliana Col-0 mitochondrial genome
peterdfields/assemblage
Tools for working with second gen assemblies, fasta sequences, etc
peterdfields/at-scripts
Helper scripts for dealing with various file conversions etc.
peterdfields/bds-files
Supplementary files for my book, "Bioinformatics Data Skills"
peterdfields/bedtools-protocols
peterdfields/book
peterdfields/CND
clone of source files from CNDm and CNDd for Unix
peterdfields/cymira
The Cytonuclear Molecular Interactions Reference for Arabidopsis
peterdfields/driftsel
Modified version of the R package "driftsel"
peterdfields/Drosophila-Genome-Nexus
The Drosophila Genome Nexus is a repository of more than 600 Drosophila melanogaster genomes from Africa, Europe, and North America. All scripts and pipeline commands used to generate these genome sequences are available here.
peterdfields/ethoscope
a platform from monitoring animal behaviour in real time from a raspberry pi
peterdfields/Fields_etal_2015_MolEcolRes
peterdfields/gatk-docs
Documentation archive for GATK tools and workflows
peterdfields/isoseq_explorations
peterdfields/isoseq_rarefaction
peterdfields/Lagrange
A minimalist Jekyll theme for running a personal blog
peterdfields/ngsTools
Programs to analyse NGS data for population genetics purposes
peterdfields/pbalign
pbalign maps PacBio reads to reference sequences and saves alignments to a SAM or cmp.h5 file.
peterdfields/protocols
Sharbrough lab protocols
peterdfields/quantiNEMO_Taylor2010
peterdfields/Ragout
Chromosome-level scaffolding using multiple references
peterdfields/SnIPRE-Input
Create input file needed to run the SnIPRE program (http://med.stanford.edu/bustamantelab/software.html)
peterdfields/workshops
A collection of workshop material