Pinned Repositories
allele_validator
Simple measurement of true positive call ratio from a VCF file: map alleles to a truth assembly
ASM_NGS_conf_report
ASM_rapid_ngs_challenge_2015
Repository for what we did for our entry, and how to reproduce it
cortex
reference free variant assembly
eval_wgs_for_public_health
Datasets, truthsets, auto-analysis for evaluating WGS pipelines for public health needs. Starting with TB
good_background_papers
Mykrobe-predictor
Antibiotic resistance predictions in minutes on a laptop
poligraph
Polish a nanopore assembly using Illumina reads
toypy
Old man slowly learns Python; place I can ask basic questions
useful_R
Stuff I want to be able to find
iqbal-lab's Repositories
iqbal-lab/Mykrobe-predictor
Antibiotic resistance predictions in minutes on a laptop
iqbal-lab/cortex
reference free variant assembly
iqbal-lab/eval_wgs_for_public_health
Datasets, truthsets, auto-analysis for evaluating WGS pipelines for public health needs. Starting with TB
iqbal-lab/good_background_papers
iqbal-lab/poligraph
Polish a nanopore assembly using Illumina reads
iqbal-lab/toypy
Old man slowly learns Python; place I can ask basic questions
iqbal-lab/useful_R
Stuff I want to be able to find
iqbal-lab/allele_validator
Simple measurement of true positive call ratio from a VCF file: map alleles to a truth assembly
iqbal-lab/ASM_NGS_conf_report
iqbal-lab/ASM_rapid_ngs_challenge_2015
Repository for what we did for our entry, and how to reproduce it
iqbal-lab/denovo-assembly-tutorial
A tutorial for learning de novo assembly
iqbal-lab/mediator
a medium inspired jekyll theme
iqbal-lab/mwsfs
messing with baumdicker dispensable gene sfs
iqbal-lab/outbryk
iqbal-lab/pg
Playground. trying out stuff I want to learn or used to know
iqbal-lab/schemas
Work on data models and APIs for Genomic data.
iqbal-lab/templates
Basic templates for scripts
iqbal-lab/wt_nanopore
Private repo for shared scripts/programs for analysing Oxford Nanopore data
iqbal-lab/2020-cov-tracing
Combined scenarios for COVID transmission
iqbal-lab/BitArray
C bit array structs and methods
iqbal-lab/code-review-examples
iqbal-lab/datasciencelabs2022
Fork of Rafarl Irrizarry's BST 260: Introduction to Data Science Fall 2022 Course Repository
iqbal-lab/iqbal-lab.github.io
Build a Jekyll blog in minutes, without touching the command line.
iqbal-lab/la_dbg
Barebones for a C++ repo with cmake and googletest, and a status bar from travis
iqbal-lab/minimap
Experimental tool to find approximate mapping positions between long sequences
iqbal-lab/paper-2016-vBWT-gramtools-WABI
Scripts and files for 2016 paper accepted at WABI on the vBWT encoding of genetic variation
iqbal-lab/toy-stl-explore
iqbal-lab/white-paper
:newspaper: Jekyll theme used in my blog gotchacode.com