iqbal-lab/cortex

Issues

• Bug in arg-parsing for Joint workflow with no reference (ref Absent)

  #32 opened a year ago by iqbal-lab
  1

• make: *** [Makefile:29: src/alignment_cmdline.o] Error 1

  #31 opened 2 years ago by kdyoung100
  0

• run_calls.pl line 2137 error

  #29 opened 3 years ago by Srividhya-Sainath
  5

• Bump up seq_file dependency

  #28 opened 4 years ago by bricoletc
  0

• System-wide htslib can fail linkage

  #26 opened 4 years ago by bricoletc
  1

• Bundled htslib won't compile - vcfcheck.c:358: undefined reference to `gt_type'

  #13 opened 8 years ago by tseemann
  6

• Cortex not outputting empty VCF when genotyped calls file is empty

  #25 opened 4 years ago by iqbal-lab
  0

• Possible precedence issue with control flow operator

  #24 opened 5 years ago by iqbal-lab
  0

• zlib.h: No such file or directory

  #23 opened 6 years ago by ShawnCone
  4

• Please tag a release. Pretty please?

  #21 opened 6 years ago by tseemann
  3

• make MAXK=31 NUM_COLS=1 cortex_var

  #22 opened 6 years ago by EmilyWesel
  5

• In function `print_usage': nw_cmdline.c undefined reference to `string_buff_strlen'

  #15 opened 8 years ago by tseemann
  5

• Running the run_calls wrapper with different numbers of samples produces different SNPs

  #17 opened 7 years ago by bioinfo11
  1

• run_call.pl error

  #16 opened 7 years ago by bioinfo11
  2

• wrong ref allele given in vcf of calls

  #14 opened 9 years ago by rmcolq
  0

• run_indep_wkflow_with_gnu_par hangs after parallel build step before combine

  #12 opened 9 years ago by rmcolq
  7

• Fix known bugs in genotyping and look at confidence distribution

  #11 opened 9 years ago by iqbal-lab
  6

• New pipeline has a script which assumes k=31!!

  #6 opened 9 years ago by iqbal-lab
  1

• Test Bandage once GFA support added

  #4 opened 9 years ago by iqbal-lab
  1

• Add GFA support

  #3 opened 9 years ago by iqbal-lab
  5

• Remove GSL dependency

  #10 opened 9 years ago by iqbal-lab
  1

• missing / / in run_indep_wkflow_with_gnu_par.pl

  #9 opened 9 years ago by hcdenbakker
  0

• problem with run_indep_wkflow_with_gnu_par.pl

  #7 opened 9 years ago by hcdenbakker
  8

• Improve mem height/width estimation in run_indep_workflow...

  #5 opened 9 years ago by iqbal-lab
  4

• Modify run-calls to delete working files at the end

  #1 opened 10 years ago by iqbal-lab
  0