bricoletc

Researcher in biology and bioinformatics - developer of open-source software - working at CNRS (France)

CNRSFrance

Pinned Repositories

Acanthophis
A comprehensive, opinionated plant variant calling pipeline in Snakemake
Language:TeX0 0 00
advanced_python_2019_EBI
Advanced Python Course for PreDoc Training at the EBI
Language:Jupyter Notebook0 0 00
backTranslate
Language:Python0 1 00
bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
Brice_Markdown_CV
My CV in Markdown format
Language:CSS1 1 00
delfies
Querying genomes for evidence of Programmed DNA Elimination
Language:Python3 2 51
HuffmanCompression
C++ Implementation of Huffman Coding for file compression
Language:C++1 0 01
WMS_teaching
Tutorial on snakemake
Language:Python2 3 03
gramtools
Genome inference from a population reference graph
Language:C++96 7 16215
snakefmt
The uncompromising Snakemake code formatter
Language:Python180 3 13232

bricoletc's Repositories

bricoletc/delfies
Querying genomes for evidence of Programmed DNA Elimination
Language:Python3 2 51
bricoletc/WMS_teaching
Tutorial on snakemake
Language:Python2 3 03
bricoletc/Brice_Markdown_CV
My CV in Markdown format
Language:CSS1 1 00
bricoletc/Acanthophis
A comprehensive, opinionated plant variant calling pipeline in Snakemake
Language:TeX0 0 00
bricoletc/backTranslate
Language:Python0 1 00
bricoletc/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell0 0 00
bricoletc/cortex
reference free variant assembly
Language:C0 0 00
bricoletc/bricoletc.github.io
bricoletc/datasci
Language:Python1 0
bricoletc/dotfiles
Language:Shell2 0
bricoletc/GCP
Genotype confidence percentile header-only c++ implementation
Language:C++0 0
bricoletc/genomepy
genes and genomes at your fingertips
Language:Python1 0
bricoletc/googletest
Googletest - Google Testing and Mocking Framework
Language:C++0 0
bricoletc/gramtools
Genome inference from a population reference graph
Language:C++0 0
bricoletc/lsf
Snakemake profile for running jobs on an LSF cluster
Language:Python1 0
bricoletc/make_prg
Code to create a PRG from a Multiple Sequence Alignment file
Language:Python1 0
bricoletc/minos
Variant call adjudication
Language:Python0 0
bricoletc/MosaicAligner
Gil's HMM-based alignment/recombination software from Zilversmit et al. 2013.
Language:C1 0
bricoletc/nf-core-configs
Config files used to define parameters specific to compute environments at different Institutions
Language:Nextflow0 0
bricoletc/phd-thesis-template
A LaTeX / XeLaTeX / LuaLaTeX PhD thesis template for Cambridge University Engineering Department (CUED)
Language:TeX0 0
bricoletc/project_rosalind
Language:Rust
bricoletc/purge_dups
haplotypic duplication identification tool
Language:C
bricoletc/py-cortex-api
Python API for cortex
Language:Python1 0
bricoletc/Ratatosk
Hybrid error correction of long reads using colored de Bruijn graphs
bricoletc/research-software
:computer: Instructions, tips and issue tracker for the software on the EBI computing cluster
Language:Shell1 0
bricoletc/scipy
SciPy library main repository
Language:Python0 0
bricoletc/seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
Language:Go0 0
bricoletc/snakefmt
The uncompromising Snakemake code formatter
Language:Python1 0
bricoletc/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
Language:Python1 01
bricoletc/TE-Aid
Annotation helper tool for the manual curation of transposable element consensus sequences
Language:R0 0