bricoletc
Researcher in biology and bioinformatics - developer of open-source software - working at CNRS (France)
CNRSFrance
Pinned Repositories
Acanthophis
A comprehensive, opinionated plant variant calling pipeline in Snakemake
advanced_python_2019_EBI
Advanced Python Course for PreDoc Training at the EBI
backTranslate
bioconda-recipes
Conda recipes for the bioconda channel.
Brice_Markdown_CV
My CV in Markdown format
delfies
Querying genomes for evidence of Programmed DNA Elimination
HuffmanCompression
C++ Implementation of Huffman Coding for file compression
WMS_teaching
Tutorial on snakemake
gramtools
Genome inference from a population reference graph
snakefmt
The uncompromising Snakemake code formatter
bricoletc's Repositories
bricoletc/HuffmanCompression
C++ Implementation of Huffman Coding for file compression
bricoletc/advanced_python_2019_EBI
Advanced Python Course for PreDoc Training at the EBI
bricoletc/cluster_vcf_records
Python package to cluster VCF records. Used by gramtools and minos
bricoletc/ctbl
bricoletc/GFA-spec
Graphical Fragment Assembly (GFA) Format Specification
bricoletc/graph_make_prg
bricoletc/pandora
Pan-genome inference with long error-prone sequencing reads
bricoletc/PQueue
Implementation of a binary heap based priority queue
bricoletc/RecoderLaRoue
recoder des algorithmes connus en phylogénie (et autres), dans un objectif pédagogique
bricoletc/seqan
SeqAn's official repository.
bricoletc/sgra
Peptide inference from imperfect set of mass spec peaks by longest path construction
bricoletc/simval_gramtools
simulated data-driven validation for gramtools
bricoletc/single-cell-rna-seq-4predocs
bricoletc/teaching
bricoletc/tubemaps_pilot
Playing around with getting sequence tubemaps to work for population reference graphs.
bricoletc/vg
tools for working with genome variation graphs