Pinned Repositories
clockwork
CRyPTIC data processing pipelines
cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
gramtools
Genome inference from a population reference graph
make_prg
Code to create a PRG from a Multiple Sequence Alignment file
minos
Variant call adjudication
pandora
Pan-genome inference and genotyping with long noisy or short accurate reads
pling
Plasmid analysis using rearrangement distances
simutator
Simulate mutations in genomes
varifier
Variant call verification
viridian
iqbal-lab-org's Repositories
iqbal-lab-org/pandora
Pan-genome inference and genotyping with long noisy or short accurate reads
iqbal-lab-org/gramtools
Genome inference from a population reference graph
iqbal-lab-org/clockwork
CRyPTIC data processing pipelines
iqbal-lab-org/pling
Plasmid analysis using rearrangement distances
iqbal-lab-org/make_prg
Code to create a PRG from a Multiple Sequence Alignment file
iqbal-lab-org/minos
Variant call adjudication
iqbal-lab-org/cobs
COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)
iqbal-lab-org/viridian
iqbal-lab-org/varifier
Variant call verification
iqbal-lab-org/BIGSI
BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data
iqbal-lab-org/sprog
Species Probes Generator
iqbal-lab-org/Mykrobe_tb_workflow
A workflow for analysis and resistance profiling of Mycobacterium tuberculosis nanopore data with Mykrobe
iqbal-lab-org/cylon
Virus assembler from amplicon sequencing reads
iqbal-lab-org/covid-truth-eval
Evaluate accuracy of covid assemblies where truth is available
iqbal-lab-org/ivcfmerge
A utility to merge a large number of VCF files incrementally
iqbal-lab-org/bigsi-ebi-api
API service for EBI's BIGSI
iqbal-lab-org/covid-truth-datasets
SARS-CoV-2 datasets for testing pipelines
iqbal-lab-org/minos-paper-benchmarking
iqbal-lab-org/QCovid
QC pipelines for sars-cov-2 sequence+consensus submitted to the ENA
iqbal-lab-org/cluster_vcf_records
Python package to cluster VCF records. Used by gramtools and minos
iqbal-lab-org/paper_gramtools_nesting
iqbal-lab-org/paper_pfalciparum_DBs
iqbal-lab-org/py-cortex-api
Python API for cortex
iqbal-lab-org/tb-sputum-project
Pipeline to analyse the TB sputum data
iqbal-lab-org/viridian_simulations_workflow
Workflow to simulate SARS-CoV-2 amplicons and reads.
iqbal-lab-org/bwa
Burrow-Wheeler Aligner for short-read alignment (see minimap2 for long-read alignment)
iqbal-lab-org/neo4j_benchmark
iqbal-lab-org/pandora_paper_roc
iqbal-lab-org/paper_pandora2020_analyses
iqbal-lab-org/triphecta