songlab-cal/gpn

Issues

• Tokenizer for gpn-msa-sapiens

  #15 opened a year ago by IandRover
  3

• Questions about reproducing results in the manuscript

  #31 opened 3 months ago by HelloWorldLTY
  4

• VEP.ipynb scoring

  #30 opened 4 months ago by Anshullllllll
  1

• GPN-SS pre-train process

  #29 opened 5 months ago by Ssupercoder
  1

• Develop a VEP for non-human organisms

  #28 opened 7 months ago by biojiangke
  1

• 'str' object has no attribute 'id'

  #27 opened 7 months ago by agryji08
  0

• Calculation of AUPRC in GPN-MSA Figure 2b

  #26 opened 9 months ago by yangzhao1230
  4

• the Increased Number of Entries in the Updated VEP Dataset on Hugging Face

  #25 opened 10 months ago by yangzhao1230
  1

• Loss weighting behavior will give inconsistent "upweighting" between batches

  #23 opened 10 months ago by yair-schiff
  3

• Cannot run vep.ipynb (variant effect prediction)

  #22 opened a year ago by raphaelmourad
  2

• Why Bidirectional LLR Calculation and Averaging

  #21 opened a year ago by yangzhao1230
  1

• Discrepancy in ClinVar Pathogenic Variant Counts: Paper vs. Hugging Face Dataset

  #20 opened a year ago by yangzhao1230
  2

• fstring syntax error for python 3.7.13

  #19 opened a year ago by russellkune
  0

• IndexError: tuple index out of range

  #16 opened a year ago by dahaigui
  12

• How can I specify the GPU to run the program?

  #13 opened a year ago by dahaigui
  2

• ConnectionError: Couldn't reach 'results/dataset' on the Hub (ConnectionError)

  #12 opened a year ago by dahaigui
  2

• Do you have pre-trained GPN for different genomes?

  #4 opened a year ago by gdolsten
  8

• Help with alternative set up

  #11 opened a year ago by Michal-Babins
  11

• Variant effect prediction analysis

  #10 opened a year ago by smruti241
  1

• GPN for covid genome

  #9 opened 2 years ago by smruti241
  1

• How to generate the missing output files

  #8 opened 2 years ago by wokkel
  3

• Data used for computing perplexity

  #7 opened 2 years ago by liuyq123
  4

• Get error when downloading vep data

  #1 opened 2 years ago by liuyq123
  5

• Benefits of using S4D?

  #6 opened 2 years ago by aga-relation
  1

• Question about Model

  #5 opened 2 years ago by gdolsten
  11

• Use multiple GPUs for training

  #3 opened 2 years ago by liuyq123
  6

• ignore_data_skip error

  #2 opened 2 years ago by liuyq123
  2